# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	5.56e-06	d.98.1.1	134541
1jtgB	165	1.00e-05	d.98.1.1	67267
2fyxA	143	0.9037	d.58.57.1	134411
2h36X	112	3.007		
2o8xA	70	3.530		
2a6mA	155	4.073	d.58.57.1	126287
2f5gA	133	6.405	d.58.57.1	132991
1z2nX	324	9.397		
2h27A	73	11.50	a.4.13.2	135993
2ismA	352	13.46		
2zfyA	234	15.96		
2vjvA	159	16.27		
1yqgA	263	17.68		
2q88A	257	17.68		
1tygB	87	17.94	d.15.3.2	107455
1nstA	325	18.19	c.37.1.5	31951
1r69	69	20.81		
3bemA	218	21.32		
1vmbA	140	21.42	d.58.14.1	113672
2glxA	332	24.07		
1adrA	76	24.83	a.35.1.2	17042
1vjfA	180	25.14	d.116.1.1	100809
1vfrA	218	27.17	d.90.1.1	40247
2jmkA	111	29.95		
2ef8A	84	30.24		
1utxA	66	32.80	a.35.1.3	108034
1vkiA	181	33.29	d.116.1.1	108664
2iwxA	214	34.64	d.122.1.1	137758
2cxyA	125	34.78		
1zud2	66	34.78		
2iorA	235	36.97		
1or7A	194	44.64	a.4.13.2,a.177.1.1	87332,87333
2fbhA	146	45.96	a.4.5.28	133245
2hpaA	342	49.06	c.60.1.2	33985
1fs1B	141	49.81	a.157.1.1,d.42.1.1	19252,38664
1nox	205	50.07		
1h67A	108	50.69	a.40.1.1	65643
2bnmA	198	50.93	a.35.1.3,b.82.1.10	128835,128836
2bf5A	98	55.77	d.137.1.1	128405
2b5aA	77	57.09	a.35.1.3	127882
1th8A	145	58.44	d.122.1.3	106908
2ppxA	99	60.09		
1cp3A	277	60.61	c.17.1.1	30992
2jspA	87	60.79		
1r69A	69	62.26	a.35.1.2	17028
1lj9A	144	62.64	a.4.5.28	78035
2freA	200	64.82	d.90.1.1	133985
2fxuA	375	65.18	c.55.1.1,c.55.1.1	134340,134341
2ejhA	255	67.48		
1rw1A	114	70.07	c.47.1.12	111945
3c1aA	315	70.90		
1m4tA	392	71.53	c.95.1.1,c.95.1.1	78617,78618
2hjsA	340	73.11	c.2.1.3,d.81.1.1	136547,136548
1j1hA	144	73.29	b.111.1.1	77056
2ccmA	191	73.39		
2nrrA	159	74.15		
1ykiA	217	74.68	d.90.1.1	123520
2ntiA	249	75.73		
1wuaA	375	76.35	c.55.1.1,c.55.1.1	121281,121282
1lmb3	92	78.48		
1vhtA	218	79.93	c.37.1.1	100700
2ho3A	325	80.20		
2hr3A	147	81.13	a.4.5.28	136678
1ywqA	200	82.35	d.90.1.1	124162
1lliA	92	85.16	a.35.1.2	17025
1bifA	469	86.12	c.37.1.7,c.60.1.4	31961,34003
2f1sA	186	86.31		
2cjlA	204	87.32		
2pefA	373	88.70		
2p2rA	76	88.73		
1rp3A	239	89.11	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680