# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	7.71e-06	d.98.1.1	134541
1jtgB	165	1.04e-05	d.98.1.1	67267
2fyxA	143	1.419	d.58.57.1	134411
2a6mA	155	2.837	d.58.57.1	126287
2o8xA	70	3.512		
2f5gA	133	6.113	d.58.57.1	132991
2ismA	352	8.281		
2h27A	73	9.694	a.4.13.2	135993
1tygB	87	12.34	d.15.3.2	107455
2h36X	112	12.54		
1r69	69	13.63		
1vmbA	140	15.76	d.58.14.1	113672
2vjvA	159	17.21		
1adrA	76	17.82	a.35.1.2	17042
1nstA	325	19.44	c.37.1.5	31951
3bemA	218	19.79		
2q88A	257	20.90		
1yqgA	263	21.05		
2zfyA	234	22.90		
1utxA	66	23.05	a.35.1.3	108034
2fbhA	146	27.61	a.4.5.28	133245
2ppxA	99	27.92		
1zud2	66	31.05		
1vfrA	218	31.56	d.90.1.1	40247
1z2nX	324	32.37		
1nox	205	32.89		
2ef8A	84	34.32		
2cxyA	125	35.76		
2glxA	332	35.96		
1or7A	194	37.81	a.4.13.2,a.177.1.1	87332,87333
2b5aA	77	39.47	a.35.1.3	127882
2hr3A	147	40.62	a.4.5.28	136678
1fs1B	141	42.19	a.157.1.1,d.42.1.1	19252,38664
2bnmA	198	42.58	a.35.1.3,b.82.1.10	128835,128836
1r69A	69	42.92	a.35.1.2	17028
1lj9A	144	48.28	a.4.5.28	78035
2jspA	87	48.83		
1mt6A	280	53.35	b.76.2.1,b.85.7.1	79446,79447
2iorA	235	54.59		
2dqaA	124	56.05		
2nrrA	159	56.23		
2jmkA	111	56.56		
2aqjA	538	57.12		
1vkiA	181	58.12	d.116.1.1	108664
1vk1A	242	62.56	d.268.1.2	108634
2freA	200	63.67	d.90.1.1	133985
2iskA	230	64.10		
1h67A	108	64.17	a.40.1.1	65643
2cro	71	67.83		
1cp3A	277	68.58	c.17.1.1	30992
1ykiA	217	69.73	d.90.1.1	123520
2hjsA	340	69.86	c.2.1.3,d.81.1.1	136547,136548
1m4tA	392	70.05	c.95.1.1,c.95.1.1	78617,78618
3b7hA	78	70.14		
3bs3A	76	71.00		
2hbjA	410	71.08	a.60.8.4,c.55.3.5	136311,136312
1vhtA	218	73.70	c.37.1.1	100700
3broA	141	73.72		
1necA	216	73.80	d.90.1.1	40249
2p2rA	76	74.06		
1j1hA	144	74.76	b.111.1.1	77056
2ccmA	191	75.08		
1noxA	205	75.09	d.90.1.1	40242
1vjfA	180	75.48	d.116.1.1	100809
3c1aA	315	76.53		
2hpaA	342	80.43	c.60.1.2	33985
1ywqA	200	81.53	d.90.1.1	124162
2rcyA	262	81.64		
2f1sA	186	83.30		
1lnwA	147	83.60	a.4.5.28	78104
1lliA	92	84.72	a.35.1.2	17025
2aawA	222	85.69	a.45.1.1,c.47.1.5	126496,126497
1bd0A	388	86.83	b.49.2.2,c.1.6.1	26480,28642
1ejjA	511	87.84	c.105.1.1,c.76.1.3	59422,59423