# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	3.91e-06	d.98.1.1	134541
1jtgB	165	5.69e-06	d.98.1.1	67267
2fyxA	143	1.039	d.58.57.1	134411
2o8xA	70	3.470		
2a6mA	155	3.540	d.58.57.1	126287
2f5gA	133	6.962	d.58.57.1	132991
2ismA	352	9.549		
2h36X	112	9.652		
1vmbA	140	9.713	d.58.14.1	113672
2h27A	73	10.99	a.4.13.2	135993
1tygB	87	12.08	d.15.3.2	107455
2vjvA	159	15.76		
1r69	69	16.40		
1z2nX	324	17.96		
1adrA	76	19.06	a.35.1.2	17042
1nstA	325	20.10	c.37.1.5	31951
3bemA	218	20.34		
2q88A	257	22.36		
1yqgA	263	24.61		
2zfyA	234	25.12		
1vfrA	218	25.30	d.90.1.1	40247
2ef8A	84	31.04		
2jmkA	111	31.05		
1utxA	66	31.97	a.35.1.3	108034
1zud2	66	32.15		
1nox	205	35.70		
2fbhA	146	37.26	a.4.5.28	133245
1or7A	194	38.06	a.4.13.2,a.177.1.1	87332,87333
2ppxA	99	39.19		
1j1hA	144	44.14	b.111.1.1	77056
2nrrA	159	45.07		
1fs1B	141	45.86	a.157.1.1,d.42.1.1	19252,38664
1h67A	108	45.89	a.40.1.1	65643
2glxA	332	50.92		
2bnmA	198	51.65	a.35.1.3,b.82.1.10	128835,128836
2hjsA	340	53.25	c.2.1.3,d.81.1.1	136547,136548
2b5aA	77	53.87	a.35.1.3	127882
1mt6A	280	54.13	b.76.2.1,b.85.7.1	79446,79447
2iorA	235	54.25		
1iynA	295	55.54	a.93.1.1	90722
2iwxA	214	56.07	d.122.1.1	137758
1lj9A	144	56.83	a.4.5.28	78035
1r69A	69	58.19	a.35.1.2	17028
2cxyA	125	58.76		
2jspA	87	59.38		
2ccmA	191	60.05		
1vhtA	218	64.84	c.37.1.1	100700
1rw1A	114	69.91	c.47.1.12	111945
2rcyA	262	69.95		
1m4tA	392	70.71	c.95.1.1,c.95.1.1	78617,78618
1ykiA	217	70.78	d.90.1.1	123520
1v63A	101	72.64	a.21.1.1	108391
2bf5A	98	77.85	d.137.1.1	128405
1qtnA	164	79.68	c.17.1.1	30999
1vkiA	181	80.76	d.116.1.1	108664
2iskA	230	81.00		
1lmb3	92	81.10		
2f1sA	186	83.48		
2ntiA	249	84.11		
2graA	277	86.47		
3c1aA	315	86.72		
1noxA	205	87.25	d.90.1.1	40242
2p2rA	76	87.41		
1ywqA	200	87.48	d.90.1.1	124162