# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	0.000149	d.98.1.1	134541
1jtgB	165	0.000179	d.98.1.1	67267
2fyxA	143	3.701	d.58.57.1	134411
2o8xA	70	7.193		
2a6mA	155	7.629	d.58.57.1	126287
2h36X	112	10.81		
2h27A	73	21.72	a.4.13.2	135993
2vjvA	159	22.58		
2h0uA	217	23.19		
6paxA	133	27.34	a.4.1.5,a.4.1.5	64758,64759
1jkoC	52	29.25	a.4.1.2	66809
3bemA	218	30.00		
2f5gA	133	30.52	d.58.57.1	132991
2hr3A	147	32.44	a.4.5.28	136678
1vfrA	218	37.75	d.90.1.1	40247
2ef8A	84	39.61		
1or7A	194	42.17	a.4.13.2,a.177.1.1	87332,87333
2bnmA	198	42.71	a.35.1.3,b.82.1.10	128835,128836
1tygB	87	43.75	d.15.3.2	107455
1r69	69	45.79		
3boqA	160	52.65		
2b5aA	77	53.68	a.35.1.3	127882
3b7hA	78	60.85		
1vj7A	393	62.77	a.211.1.1,d.218.1.8	100801,100802
1qtnA	164	63.05	c.17.1.1	30999
2scpA	174	65.23	a.39.1.5	17256
1adrA	76	68.22	a.35.1.2	17042
2amyA	246	71.79	c.108.1.10	127026
1eb7A	323	73.90	a.3.1.5,a.3.1.5	59404,59405
2qtqA	213	74.93		
1utxA	66	75.16	a.35.1.3	108034
1lmb3	92	75.28		
2cro	71	75.77		
1pdnC	128	78.70	a.4.1.5	16047
1y7yA	74	79.14	a.35.1.3	122729
1lliA	92	84.49	a.35.1.2	17025
3bs3A	76	89.84