# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.30e-05	d.98.1.1	67267
2g2uB	165	1.54e-05	d.98.1.1	134541
2fyxA	143	2.544	d.58.57.1	134411
2h36X	112	2.619		
2o8xA	70	5.506		
2a6mA	155	8.366	d.58.57.1	126287
2ismA	352	8.653		
2f5gA	133	10.67	d.58.57.1	132991
1tygB	87	11.07	d.15.3.2	107455
1z2nX	324	14.51		
1r69	69	17.63		
2zfyA	234	19.59		
2fbhA	146	21.44	a.4.5.28	133245
2h27A	73	21.88	a.4.13.2	135993
3bemA	218	22.06		
2iorA	235	26.89		
1utxA	66	26.99	a.35.1.3	108034
2iwxA	214	29.90	d.122.1.1	137758
1adrA	76	31.21	a.35.1.2	17042
2ef8A	84	31.76		
1or7A	194	32.51	a.4.13.2,a.177.1.1	87332,87333
1vmbA	140	32.54	d.58.14.1	113672
1vfrA	218	33.19	d.90.1.1	40247
2glxA	332	33.45		
1nstA	325	34.06	c.37.1.5	31951
2bnmA	198	35.02	a.35.1.3,b.82.1.10	128835,128836
2vjvA	159	38.84		
1yqgA	263	39.17		
2aqjA	538	39.63		
1y7yA	74	40.35	a.35.1.3	122729
2b5aA	77	41.47	a.35.1.3	127882
1nox	205	42.29		
2q88A	257	42.76		
1zud2	66	43.33		
1vkiA	181	45.54	d.116.1.1	108664
3c1aA	315	46.14		
2hpaA	342	47.14	c.60.1.2	33985
1sedA	117	50.13	a.219.1.1	105449
2cxyA	125	50.76		
3b40A	417	51.05		
1r69A	69	52.66	a.35.1.2	17028
2ntiA	249	52.88		
1j1hA	144	53.54	b.111.1.1	77056
2ppxA	99	54.53		
2ho3A	325	59.79		
1lmb3	92	62.15		
1lnwA	147	64.67	a.4.5.28	78104
1vjfA	180	67.09	d.116.1.1	100809
2hr3A	147	67.26	a.4.5.28	136678
2ccmA	191	68.91		
3b7hA	78	69.24		
2e01A	457	70.39		
1m4tA	392	72.33	c.95.1.1,c.95.1.1	78617,78618
2nrrA	159	72.43		
2ejhA	255	72.86		
2jmkA	111	74.98		
2jspA	87	76.60		
1lj9A	144	78.10	a.4.5.28	78035
3bs3A	76	79.22		
1ykiA	217	81.80	d.90.1.1	123520
1fqvD	149	83.09	a.157.1.1,d.42.1.1	19263,38667
2cro	71	83.82		
1ywuA	149	84.21	b.45.2.1	124164
1vhtA	218	84.81	c.37.1.1	100700
1lliA	92	86.93	a.35.1.2	17025