# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 7.99e-06 d.98.1.1 134541 1jtgB 165 1.55e-05 d.98.1.1 67267 2fyxA 143 0.8366 d.58.57.1 134411 1y1xA 191 1.392 a.39.1.8 116374 2aaoA 166 1.578 1mt6A 280 2.333 b.76.2.1,b.85.7.1 79446,79447 2hjsA 340 2.766 c.2.1.3,d.81.1.1 136547,136548 2pnqA 467 5.157 1bu6O 501 5.294 c.55.1.4,c.55.1.4 33499,33500 9gafA 295 5.732 d.153.1.5 42008 2h36X 112 6.109 2cn3A 737 7.005 2a6mA 155 7.915 d.58.57.1 126287 1topA 162 9.746 a.39.1.5 17223 1ncx 162 9.870 3boqA 160 10.50 2dqaA 124 10.86 1ggzA 148 10.97 a.39.1.5 70176 1yq2A 1024 13.78 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2o8xA 70 14.36 2f5gA 133 14.61 d.58.57.1 132991 2obhA 143 14.62 2o5gA 148 14.97 2h0uA 217 16.67 1g61A 228 18.39 d.126.1.1 41126 2gv5A 161 18.96 1wdcC 156 19.03 a.39.1.5 17317 1vmbA 140 19.62 d.58.14.1 113672 2q88A 257 19.76 1r13A 148 20.88 d.169.1.1,h.1.1.1 96782,96783 1vkiA 181 21.24 d.116.1.1 108664 1fxlA 167 21.34 d.58.7.1,d.58.7.1 39183,39184 2p8bA 369 23.07 2f3yA 148 23.22 1kit 757 23.72 1lfaA 187 23.80 c.62.1.1 34122 1m4tA 392 23.89 c.95.1.1,c.95.1.1 78617,78618 1efpB 252 24.17 c.26.2.3 31636 1um8A 376 24.81 c.37.1.20 99580 1tygB 87 24.95 d.15.3.2 107455 2ntiA 249 25.07 1nstA 325 25.58 c.37.1.5 31951 2ix4A 431 25.92 c.95.1.1,c.95.1.1 137759,137760 1mb4A 370 26.86 c.2.1.3,d.81.1.1 78908,78909 2amyA 246 28.84 c.108.1.10 127026 3bemA 218 30.06 1dqpA 230 30.90 c.61.1.1 34069 2i75A 320 31.66 1vjfA 180 33.43 d.116.1.1 100809 1cfyA 143 33.61 d.109.1.2 40858 2zfyA 234 33.75 1uohA 226 36.75 d.211.1.1 99690 2rh1A 500 36.80 2p2sA 336 38.83 2vjvA 159 39.08 1fqvD 149 40.18 a.157.1.1,d.42.1.1 19263,38667 1pixA 587 41.88 c.14.1.4,c.14.1.4 118578,118579 1c4zA 358 42.07 d.148.1.1 41766 1l9cA 389 43.41 c.3.1.2,d.16.1.3 77815,77816 1im4A 221 43.83 e.8.1.7 62581 1ezvD 245 45.33 a.3.1.3,f.23.11.1 59546,59547 2bl0C 142 46.24 2c9hA 444 46.78 1a2xA 159 48.89 a.39.1.5 17251 1iynA 295 50.34 a.93.1.1 90722 2pvaA 345 50.61 d.153.1.3 41850 1cll 148 50.72 1tv8A 340 50.74 c.1.28.3 107352 2h27A 73 50.79 a.4.13.2 135993 1qtnA 164 52.31 c.17.1.1 30999 1cnv 299 54.11 2vdjA 301 54.26 1rhsA 296 55.01 c.46.1.2,c.46.1.2 32703,32704 1r69 69 55.14 1gof 639 55.86 1p1mA 406 55.95 b.92.1.4,c.1.9.9 87696,87697 2fbhA 146 57.42 a.4.5.28 133245 2ntkA 222 57.49 d.153.2.1 138583 1w8oA 601 57.99 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 2dkfA 431 58.31 1or7A 194 63.48 a.4.13.2,a.177.1.1 87332,87333 2r7dA 469 64.02 1th8A 145 64.16 d.122.1.3 106908 1j6pA 418 64.48 b.92.1.4,c.1.9.9 77089,77090 1yqgA 263 64.81 1zh5A 195 65.41 a.4.5.46,d.58.7.1 125073,125074 2vr4A 846 65.99 1attA 421 68.50 e.1.1.1 42638 1p7tA 731 68.60 c.1.13.1 94319 1nox 205 69.05 3c3dA 311 69.13 2bnmA 198 71.46 a.35.1.3,b.82.1.10 128835,128836 1p4kA 295 71.70 d.153.1.5 87772 1utxA 66 71.77 a.35.1.3 108034 1s1eA 224 74.58 a.39.1.5 112007 1vfrA 218 74.59 d.90.1.1 40247 2eb4A 267 74.95 1j9yA 385 76.24 c.1.8.3 62791 1qasA 622 76.64 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 1dseA 292 77.33 a.93.1.1 59130 2iorA 235 77.84 1cfbA 205 78.42 b.1.2.1,b.1.2.1 21991,21992 2f1sA 186 80.18 1nnlA 225 81.50 c.108.1.4 85906 1kqzA 273 81.96 c.1.8.5 68844 2hr3A 147 81.97 a.4.5.28 136678 2ppxA 99 82.94 2yv5A 302 83.31 1u8vA 490 84.40 a.29.3.1,e.6.1.1 113196,113197 2c0rA 362 88.30 c.67.1.4 129604 2ef8A 84 89.18