# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	5.20e-06	d.98.1.1	67267
2g2uB	165	5.99e-06	d.98.1.1	134541
2fyxA	143	1.621	d.58.57.1	134411
2o8xA	70	5.029		
2h36X	112	5.397		
2a6mA	155	5.398	d.58.57.1	126287
2f5gA	133	8.802	d.58.57.1	132991
1vmbA	140	9.863	d.58.14.1	113672
1tygB	87	10.21	d.15.3.2	107455
1r69	69	12.65		
2h27A	73	16.33	a.4.13.2	135993
3bemA	218	16.81		
2iorA	235	19.45		
2ismA	352	19.74		
1utxA	66	21.41	a.35.1.3	108034
1z2nX	324	22.37		
2fbhA	146	22.64	a.4.5.28	133245
2zfyA	234	22.70		
1or7A	194	24.66	a.4.13.2,a.177.1.1	87332,87333
1adrA	76	27.28	a.35.1.2	17042
2vjvA	159	28.34		
2bnmA	198	30.73	a.35.1.3,b.82.1.10	128835,128836
2glxA	332	30.81		
2iwxA	214	30.82	d.122.1.1	137758
1vfrA	218	31.23	d.90.1.1	40247
1y7yA	74	31.62	a.35.1.3	122729
3b40A	417	32.51		
2b5aA	77	33.21	a.35.1.3	127882
1yqgA	263	33.27		
2hpaA	342	36.15	c.60.1.2	33985
2ef8A	84	36.27		
1nstA	325	38.22	c.37.1.5	31951
1nox	205	38.95		
1vkiA	181	39.05	d.116.1.1	108664
2ppxA	99	39.82		
2q88A	257	40.94		
2ccmA	191	44.15		
1r69A	69	45.69	a.35.1.2	17028
1zud2	66	45.95		
1iynA	295	46.02	a.93.1.1	90722
2nrrA	159	48.17		
1sedA	117	49.93	a.219.1.1	105449
3b7hA	78	50.51		
1lnwA	147	54.42	a.4.5.28	78104
2cxyA	125	54.70		
1lmb3	92	55.47		
1j1hA	144	56.94	b.111.1.1	77056
1fqvD	149	58.47	a.157.1.1,d.42.1.1	19263,38667
3c1aA	315	62.32		
1m4tA	392	62.48	c.95.1.1,c.95.1.1	78617,78618
3bs3A	76	66.29		
2ho3A	325	66.40		
2hjsA	340	66.67	c.2.1.3,d.81.1.1	136547,136548
2cro	71	66.93		
1qtnA	164	67.16	c.17.1.1	30999
1fs1B	141	67.53	a.157.1.1,d.42.1.1	19252,38664
1lj9A	144	71.34	a.4.5.28	78035
1vhtA	218	73.66	c.37.1.1	100700
2hr3A	147	73.73	a.4.5.28	136678
1bd0A	388	74.60	b.49.2.2,c.1.6.1	26480,28642
1rroA	108	74.73	a.39.1.4	17195
1vknA	351	75.00	c.2.1.3,d.81.1.1	108676,108677
1ykiA	217	76.70	d.90.1.1	123520
2e01A	457	77.53		
1lliA	92	80.50	a.35.1.2	17025
1vj7A	393	81.19	a.211.1.1,d.218.1.8	100801,100802
2iskA	230	82.15		
2rcyA	262	84.40		
1y1xA	191	88.04	a.39.1.8	116374
1kqzA	273	89.82	c.1.8.5	68844