# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.67e-05	d.98.1.1	67267
2g2uB	165	1.93e-05	d.98.1.1	134541
2fyxA	143	1.418	d.58.57.1	134411
2a6mA	155	3.556	d.58.57.1	126287
2h36X	112	5.281		
2o8xA	70	6.537		
2f5gA	133	6.577	d.58.57.1	132991
1vmbA	140	8.632	d.58.14.1	113672
2ismA	352	9.655		
1tygB	87	13.92	d.15.3.2	107455
2vjvA	159	16.46		
2h27A	73	17.44	a.4.13.2	135993
3bemA	218	19.09		
2ef8A	84	20.18		
1r69	69	23.02		
2fbhA	146	23.12	a.4.5.28	133245
2bnmA	198	23.48	a.35.1.3,b.82.1.10	128835,128836
1adrA	76	23.73	a.35.1.2	17042
1or7A	194	29.05	a.4.13.2,a.177.1.1	87332,87333
1utxA	66	31.44	a.35.1.3	108034
1zud2	66	31.63		
2q88A	257	32.36		
1yqgA	263	33.93		
2hr3A	147	35.48	a.4.5.28	136678
2ppxA	99	35.50		
1nox	205	38.50		
1vfrA	218	38.77	d.90.1.1	40247
1qtnA	164	39.13	c.17.1.1	30999
1nstA	325	40.18	c.37.1.5	31951
1fs1B	141	41.36	a.157.1.1,d.42.1.1	19252,38664
2zfyA	234	43.62		
2hpaA	342	44.56	c.60.1.2	33985
1jkoC	52	45.34	a.4.1.2	66809
1lnwA	147	46.79	a.4.5.28	78104
2b5aA	77	47.60	a.35.1.3	127882
2iwxA	214	48.46	d.122.1.1	137758
1lj9A	144	50.98	a.4.5.28	78035
2nrrA	159	53.42		
1v63A	101	54.89	a.21.1.1	108391
1r69A	69	56.29	a.35.1.2	17028
1vjfA	180	56.90	d.116.1.1	100809
2ccmA	191	61.26		
1lliA	92	65.30	a.35.1.2	17025
1z2nX	324	65.51		
1h67A	108	65.99	a.40.1.1	65643
3b40A	417	66.48		
2jmkA	111	71.14		
2freA	200	71.54	d.90.1.1	133985
2rcyA	262	71.84		
2hbjA	410	72.33	a.60.8.4,c.55.3.5	136311,136312
1vj7A	393	75.27	a.211.1.1,d.218.1.8	100801,100802
2glxA	332	77.08		
2ar9A	278	77.47		
2jspA	87	78.22		
2p2rA	76	78.98		
2iskA	230	79.06		
1vkiA	181	79.35	d.116.1.1	108664
2ho3A	325	81.73		
3bs3A	76	82.07		
2ntiA	249	83.09		
2cro	71	83.89		
3ceaA	346	86.52		
3b7hA	78	87.54		
2dqaA	124	87.99		
1lmb3	92	88.78		
1fqvD	149	89.52	a.157.1.1,d.42.1.1	19263,38667