# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	9.80e-06	d.98.1.1	67267
2g2uB	165	1.18e-05	d.98.1.1	134541
2fyxA	143	1.632	d.58.57.1	134411
2a6mA	155	3.311	d.58.57.1	126287
2o8xA	70	4.427		
1vmbA	140	5.282	d.58.14.1	113672
2h36X	112	7.539		
2f5gA	133	8.951	d.58.57.1	132991
1tygB	87	14.51	d.15.3.2	107455
2h27A	73	15.00	a.4.13.2	135993
1adrA	76	16.80	a.35.1.2	17042
2fbhA	146	17.59	a.4.5.28	133245
2ismA	352	18.70		
1r69	69	18.97		
2vjvA	159	26.17		
3bemA	218	27.44		
2hr3A	147	28.04	a.4.5.28	136678
1yqgA	263	28.26		
2bnmA	198	28.71	a.35.1.3,b.82.1.10	128835,128836
2ef8A	84	31.32		
1or7A	194	32.52	a.4.13.2,a.177.1.1	87332,87333
2ppxA	99	33.17		
1qtnA	164	33.47	c.17.1.1	30999
1z2nX	324	33.81		
1utxA	66	33.96	a.35.1.3	108034
2iwxA	214	36.24	d.122.1.1	137758
1vfrA	218	36.72	d.90.1.1	40247
2nrrA	159	41.99		
2q88A	257	41.99		
2zfyA	234	42.19		
1lj9A	144	42.94	a.4.5.28	78035
1vk1A	242	43.58	d.268.1.2	108634
1cp3A	277	44.29	c.17.1.1	30992
2iorA	235	44.90		
2breA	219	47.84	d.122.1.1	128994
1zud2	66	49.50		
2rcyA	262	49.84		
1v63A	101	52.13	a.21.1.1	108391
1nox	205	52.69		
2ccmA	191	54.29		
1r69A	69	55.65	a.35.1.2	17028
2glxA	332	55.85		
1nstA	325	56.78	c.37.1.5	31951
2hjsA	340	57.29	c.2.1.3,d.81.1.1	136547,136548
2dqaA	124	58.36		
2graA	277	58.67		
2b5aA	77	59.50	a.35.1.3	127882
1m4tA	392	65.09	c.95.1.1,c.95.1.1	78617,78618
1fs1B	141	67.57	a.157.1.1,d.42.1.1	19252,38664
2cxyA	125	67.83		
2hbjA	410	69.01	a.60.8.4,c.55.3.5	136311,136312
3b7hA	78	69.97		
1j1hA	144	70.26	b.111.1.1	77056
2jspA	87	70.65		
1lmb3	92	70.98		
2ar9A	278	71.69		
1jkoC	52	72.36	a.4.1.2	66809
2gqpA	236	75.54	d.122.1.1	135513
2izzA	322	76.55		
3c1aA	315	76.95		
1vhtA	218	77.04	c.37.1.1	100700
1lliA	92	77.51	a.35.1.2	17025
1kgdA	180	78.61	c.37.1.1	68582
1um8A	376	80.51	c.37.1.20	99580
1iynA	295	81.91	a.93.1.1	90722
2e01A	457	82.29		
2ho3A	325	82.50		
1nn5A	215	83.42	c.37.1.1	85892
2cro	71	85.20		
1vj7A	393	87.24	a.211.1.1,d.218.1.8	100801,100802
2bv6A	142	87.37		
3ceaA	346	88.58		
1vjfA	180	89.78	d.116.1.1	100809