# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.93e-05	d.98.1.1	134541
1jtgB	165	2.41e-05	d.98.1.1	67267
2a6mA	155	1.322	d.58.57.1	126287
2fyxA	143	3.106	d.58.57.1	134411
2vjvA	159	4.395		
2o8xA	70	8.837		
2h36X	112	12.24		
2iygA	124	12.64		
2cxyA	125	14.83		
2f5gA	133	19.52	d.58.57.1	132991
1qtnA	164	23.54	c.17.1.1	30999
2hr3A	147	26.82	a.4.5.28	136678
2h27A	73	27.10	a.4.13.2	135993
1ic8A	194	28.31	a.4.1.1,a.35.1.1	76740,76741
2j6bA	109	34.68	d.321.1.1	138078
6paxA	133	36.21	a.4.1.5,a.4.1.5	64758,64759
2rdpA	150	42.49		
1aihA	170	46.41	d.163.1.1	42149
1vk1A	242	49.04	d.268.1.2	108634
1fs1B	141	51.44	a.157.1.1,d.42.1.1	19252,38664
3bemA	218	52.51		
2e6jA	112	55.99		
2ismA	352	56.01		
2qtqA	213	57.90		
2h0uA	217	58.52		
1wh8A	111	58.88	a.35.1.7	114636
1jkoC	52	58.95	a.4.1.2	66809
1r69	69	65.87		
1vhtA	218	66.28	c.37.1.1	100700
1smtA	122	67.59	a.4.5.5	16109
2j41A	207	72.42		
2iaiA	230	73.65		
1z8fA	228	74.89		
1r1tA	122	74.99	a.4.5.5	104769
1jbaA	204	76.35	a.39.1.5	17330
2sttA	96	76.78	a.4.5.21	16163
1ncx	162	78.06		
2q1zA	184	79.11		
1pufA	77	79.22	a.4.1.1	95131
1duxC	94	79.88	a.4.5.21	16170
2an9A	207	80.11	c.37.1.1	127037
2fbhA	146	80.25	a.4.5.28	133245
3bjaA	139	81.96		
2dafA	118	82.06		
2dkoA	146	82.29		
3crjA	199	83.07		
1g8iA	190	83.34	a.39.1.5	60363
1th8A	145	83.43	d.122.1.3	106908
1octC	156	86.58	a.4.1.1,a.35.1.1	15991,17017
2bnmA	198	86.70	a.35.1.3,b.82.1.10	128835,128836
1pdnC	128	88.21	a.4.1.5	16047
2oqkA	117	88.45