# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	6.85e-05	d.98.1.1	67267
2g2uB	165	7.14e-05	d.98.1.1	134541
2fyxA	143	2.409	d.58.57.1	134411
2a6mA	155	4.620	d.58.57.1	126287
2o8xA	70	6.882		
2h36X	112	8.969		
2vjvA	159	16.40		
2hr3A	147	20.31	a.4.5.28	136678
2f5gA	133	20.41	d.58.57.1	132991
2h27A	73	27.10	a.4.13.2	135993
1vmbA	140	28.03	d.58.14.1	113672
2cxyA	125	29.85		
2fbhA	146	31.11	a.4.5.28	133245
2bv6A	142	40.87		
2amyA	246	41.85	c.108.1.10	127026
1th8A	145	50.02	d.122.1.3	106908
2hfnA	153	50.97		
2scpA	174	51.07	a.39.1.5	17256
6paxA	133	52.53	a.4.1.5,a.4.1.5	64758,64759
1jkoC	52	55.44	a.4.1.2	66809
2iygA	124	61.27		
1j1hA	144	63.03	b.111.1.1	77056
1or7A	194	63.07	a.4.13.2,a.177.1.1	87332,87333
2h0uA	217	67.10		
2ef8A	84	68.11		
3boqA	160	68.39		
1r69	69	70.93		
2qtqA	213	72.99		
2ccmA	191	75.09		
1y1xA	191	75.10	a.39.1.8	116374
1hkqA	132	77.29	a.4.5.10	83555
3bddA	142	82.92		
2bnmA	198	84.18	a.35.1.3,b.82.1.10	128835,128836
2izzA	322	87.73