# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	9.19e-06	d.98.1.1	134541
1jtgB	165	1.55e-05	d.98.1.1	67267
1s6lA	212	8.313		
1l3kA	196	12.39	d.58.7.1,d.58.7.1	73539,73540
2o38A	120	17.17		
1r69	69	21.11		
1wdvA	152	21.43	d.116.1.1	114539
1sgvA	316	21.83	b.122.1.1,d.265.1.2	98858,98859
2a6cA	83	21.92	a.35.1.13	126236
2cro	71	21.92		
1mzbA	136	22.14	a.4.5.42	91497
1vkkA	154	22.95	d.109.1.2	108669
1gln	468	24.56		
3bs3A	76	25.00		
1oj8A	105	25.63	d.5.1.1	103975
3b7hA	78	28.28		
1repC	251	28.89	a.4.5.10,a.4.5.10	16125,16126
3sxlA	184	29.58	d.58.7.1,d.58.7.1	39173,39174
2b5aA	77	29.60	a.35.1.3	127882
1gifA	115	29.68	d.80.1.3	39837
2v75A	104	30.38		
1dgsA	667	31.69	a.60.2.2,b.40.4.6,d.142.2.2	17963,25365,41581
2dofA	85	32.90		
1ha1	184	34.34		
2ooiA	162	39.78		
1whbA	157	40.67	c.46.1.4	114639
1r69A	69	40.80	a.35.1.2	17028
1bh5A	183	41.15	d.32.1.1	38476
2uzcA	88	41.41		
2pktA	91	44.82		
2h36X	112	46.38		
2o8xA	70	46.88		
1qr0A	228	48.96	d.150.1.1,d.150.1.1	59038,59039
1lnsA	763	49.37	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
1a0rP	245	50.29	c.47.1.6	33054
1y7yA	74	51.64	a.35.1.3	122729
1j09A	468	54.96	a.97.1.1,c.26.1.1	77025,77026
2uzhA	165	55.80		
2r00A	336	55.90		
2croA	71	57.05	a.35.1.2	17038
1scmB	145	57.28	a.39.1.5	17304
1hkqA	132	58.48	a.4.5.10	83555
1z2mA	155	60.73	d.15.1.1,d.15.1.1	124387,124388
1cvjA	190	62.16	d.58.7.1,d.58.7.1	39191,39192
1y14B	171	66.12	b.40.4.5,d.230.1.1	116323,116324
1yb3A	175	70.48	d.296.1.2	122869
1ihjA	98	72.50	b.36.1.1	62382
1zh5A	195	73.28	a.4.5.46,d.58.7.1	125073,125074
1lldA	319	73.91	c.2.1.5,d.162.1.1	30177,42144
1cjgA	62	75.77	a.35.1.5	17112
2j58A	359	76.82		
1lliA	92	77.45	a.35.1.2	17025
2dulA	378	78.54		
2oh5A	248	79.71		
2ef8A	84	81.30		
2qndA	144	81.59		
1gsoA	431	82.60	b.84.2.1,c.30.1.1,d.142.1.2	28240,31647,41492
1iugA	352	83.14	c.67.1.3	90699
1dzfA	215	84.57	c.52.3.1,d.78.1.1	33344,39753
1wdcB	156	85.65	a.39.1.5	17302
2z0xA	158	85.67		
1adrA	76	85.79	a.35.1.2	17042
2ewtA	71	86.22		
2h2bA	107	86.26		
1yo5C	97	87.96	a.4.5.21	123768
2ozpA	345	89.66