Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2g2uB	1.5599e-11	2g2uB/T0399-2g2uB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
1jtgB	1.7422e-11	1jtgB/T0399-1jtgB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
1wdcB	2.5630e+01	1wdcB/T0399-1wdcB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
2qdrA	2.6041e+01	2qdrA/T0399-2qdrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oxgB	2.9429e+01	2oxgB/T0399-2oxgB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8xA	3.1554e+01	2o8xA/T0399-2o8xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h27A	3.4269e+01	2h27A/T0399-2h27A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.13.2
1t6sA	4.0632e+01	1t6sA/T0399-1t6sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.60 a.4.5.60
2fbhA	4.2058e+01	2fbhA/T0399-2fbhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.28
2grjA	4.6029e+01	2grjA/T0399-2grjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1u6eA	4.9285e+01	1u6eA/T0399-1u6eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.95.1.2 c.95.1.2
2h36X	5.1078e+01	2h36X/T0399-2h36X-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dliA	5.1096e+01	1dliA/T0399-1dliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.4 c.2.1.6 c.26.3.1
1vd6A	5.5466e+01	1vd6A/T0399-1vd6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.18.3
1fgjA	5.9243e+01	1fgjA/T0399-1fgjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vjfA	5.9901e+01	1vjfA/T0399-1vjfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.116.1.1
2hyxA	6.2530e+01	2hyxA/T0399-2hyxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f6rA	6.4395e+01	2f6rA/T0399-2f6rA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rw1A	6.5854e+01	1rw1A/T0399-1rw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.12
1j3wA	6.8391e+01	1j3wA/T0399-1j3wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.110.7.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001