# List of top-scoring protein chains for T0399.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	1.10e-07	d.98.1.1	134541
1s0wC	165	1.47e-07	d.98.1.1	98311
1xxmC	165	2.37e-07		
2pxgA	118	0.03399		
1h6vA	499	3.774	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
2j3nA	519	9.655		
2cfyA	521	9.882		
2iorA	235	10.87		
1y4uA	559	11.98		
2ioqA	624	12.24		
1zkqA	517	15.35		
1knwA	425	20.63	b.49.2.3,c.1.6.1	90969,90970
2coiA	386	42.58		
2oqkA	117	45.02		
1hpuA	525	53.66	d.114.1.1,d.159.1.2	70979,70980
1hp1A	516	54.18	d.114.1.1,d.159.1.2	70976,70977
1ushA	550	62.17	d.114.1.1,d.159.1.2	40923,42079
1d7qA	143	63.01	b.40.4.5	25331
1oidA	532	69.16	d.114.1.1,d.159.1.2	103952,103953
1gq6A	313	71.47	c.42.1.1	70341
1vpeA	398	78.07	c.86.1.1	35453
1u59A	287	78.24	d.144.1.7	107681
1mzbA	136	79.21	a.4.5.42	91497
1oi8A	532	82.80	d.114.1.1,d.159.1.2	103942,103943
1u0yA	273	83.09	d.122.1.1	119412
1qy5A	269	83.26	d.122.1.1	96573
1oy5A	257	85.24	c.116.1.4	93718