# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	3.74e-11	d.98.1.1	67267
2g2uB	165	3.79e-11	d.98.1.1	134541
1wdcB	156	14.89	a.39.1.5	17302
1vd6A	224	16.94	c.1.18.3	119991
1vs0A	310	23.69		
2b67A	204	26.49	d.90.1.1	127970
2pttB	112	27.52		
2oxgB	124	27.77		
2o8xA	70	28.65		
2iskA	230	28.85		
1t6sA	162	29.36	a.4.5.60,a.4.5.60	112271,112272
2qdrA	303	30.63		
2h27A	73	32.07	a.4.13.2	135993
1vjfA	180	33.30	d.116.1.1	100809
1j3wA	163	36.56	d.110.7.1	90833
3bemA	218	38.51		
2ho3A	325	38.79		
1ywqA	200	38.83	d.90.1.1	124162
2fbhA	146	39.03	a.4.5.28	133245
2h36X	112	40.04		
1o1zA	234	40.16	c.1.18.3	86555
1lc0A	294	42.22	c.2.1.3,d.81.1.4	73823,73824
1u6eA	335	42.59	c.95.1.2,c.95.1.2	119568,119569
1ta8A	332	44.61	d.142.2.2	112375
1dliA	402	45.56	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2freA	200	46.41	d.90.1.1	133985
2bzeA	153	48.97		
1mpyA	307	51.51	d.32.1.3,d.32.1.3	38508,38509
1l3kA	196	52.78	d.58.7.1,d.58.7.1	73539,73540
2r01A	210	56.19		
1tiwA	602	57.18	a.176.1.1,c.1.23.2	112430,112431
1noxA	205	58.37	d.90.1.1	40242
2q6mA	212	58.46		
1tltA	319	59.08	c.2.1.3,d.81.1.5	107135,107136
1oo0B	110	59.25	d.58.7.1	87183
2hayA	224	65.84		
2guzA	71	65.95		
1rw1A	114	66.01	c.47.1.12	111945
2oqcA	327	66.90		
1hkqA	132	67.24	a.4.5.10	83555
1f5vA	240	67.51	d.90.1.1	40255
2cfmA	561	69.27		
1tu3F	79	70.14	h.1.27.2	112644
2ja9A	175	75.16		
1wnaA	131	78.20	d.319.1.1	121091
2ijcA	145	78.41	a.152.1.3	137465
1h6dA	433	79.07	c.2.1.3,d.81.1.5	65656,65657
1ku3A	73	79.80	a.4.13.2	73000
2o4uX	334	83.76		
1uw4A	91	86.40	d.58.7.4	100071
2dxaA	166	86.97		
2grjA	192	87.39		
2glxA	332	88.69