# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 2.85e-13 d.98.1.1 134541 1jtgB 165 3.89e-13 d.98.1.1 67267 2cx5A 158 8.091 1wdcB 156 8.762 a.39.1.5 17302 2h27A 73 10.92 a.4.13.2 135993 1wdvA 152 10.99 d.116.1.1 114539 2ho3A 325 12.31 1vjfA 180 15.09 d.116.1.1 100809 2dxaA 166 16.51 2fbhA 146 17.02 a.4.5.28 133245 2oxgB 124 17.74 2o8xA 70 18.39 2z0xA 158 19.43 2iskA 230 20.45 2b67A 204 21.23 d.90.1.1 127970 2ef8A 84 21.49 1z82A 335 22.34 1rxwA 336 22.46 a.60.7.1,c.120.1.2 98059,98060 1vd6A 224 22.70 c.1.18.3 119991 1adrA 76 23.48 a.35.1.2 17042 1luzA 88 23.84 b.40.4.5 74271 1zh8A 340 23.96 c.2.1.3,d.81.1.5 125077,125078 2r01A 210 26.33 1t95A 240 26.90 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1xgsA 295 27.02 a.4.5.25,d.127.1.1 16216,41153 2croA 71 28.81 a.35.1.2 17038 2freA 200 29.02 d.90.1.1 133985 3bemA 218 29.44 1p9qC 256 29.93 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1wy2A 351 31.19 2bzeA 153 32.60 1vs0A 310 33.85 1r69A 69 33.96 a.35.1.2 17028 2r1fA 270 34.62 1utxA 66 34.74 a.35.1.3 108034 1a76 326 34.99 1o1zA 234 36.23 c.1.18.3 86555 2cro 71 38.99 1r69 69 39.43 2ex2A 458 42.19 e.3.1.3 132497 1lc0A 294 42.87 c.2.1.3,d.81.1.4 73823,73824 1ta8A 332 43.51 d.142.2.2 112375 1y7yA 74 44.02 a.35.1.3 122729 1t6sA 162 44.91 a.4.5.60,a.4.5.60 112271,112272 1dbxA 158 45.42 d.116.1.1 40928 2h36X 112 45.51 1v4sA 455 46.77 c.55.1.3,c.55.1.3 100309,100310 1noxA 205 47.90 d.90.1.1 40242 1wrjA 156 49.97 1zud2 66 51.42 1rw1A 114 51.90 c.47.1.12 111945 2guzA 71 53.97 1qlwA 328 53.97 c.69.1.15 34722 2bh1X 96 60.37 3bn8A 128 65.09 1behA 187 67.13 b.17.1.1 23700 2qdrA 303 67.39 1ku3A 73 67.54 a.4.13.2 73000 2db9A 149 68.27 1ywqA 200 73.16 d.90.1.1 124162 1j3wA 163 73.29 d.110.7.1 90833 1c1dA 355 73.41 c.2.1.7,c.58.1.1 30270,33918 3b79A 129 74.08 1bu6O 501 74.55 c.55.1.4,c.55.1.4 33499,33500 2b5aA 77 75.63 a.35.1.3 127882 2cx1A 187 76.77 b.122.1.1,d.17.6.4 130967,130968 1vz0A 230 78.92 a.4.14.1,d.268.1.1 108929,108930 2cr5A 109 79.08 d.15.1.2 130733 2rb7A 364 81.68 2hy5A 130 84.04 c.114.1.1 136865 1fn9A 365 85.01 d.196.1.1 59894 2fueA 262 85.78 c.108.1.10 134119 1zl0A 311 86.66 c.8.10.1,c.23.16.7 125231,125232 1vhtA 218 87.14 c.37.1.1 100700 2bkdN 134 87.74 1vkiA 181 88.17 d.116.1.1 108664 2h8gA 267 88.87 2a0mA 316 89.24 c.42.1.1 125960