# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	2.61e-12	d.98.1.1	134541
1jtgB	165	5.02e-12	d.98.1.1	67267
1dliA	402	8.438	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1u6eA	335	10.08	c.95.1.2,c.95.1.2	119568,119569
2o8xA	70	15.16		
1j3wA	163	15.23	d.110.7.1	90833
2oxgB	124	18.72		
2h27A	73	18.74	a.4.13.2	135993
2grjA	192	19.13		
1vd6A	224	19.34	c.1.18.3	119991
2qdrA	303	21.16		
2a0mA	316	21.70	c.42.1.1	125960
1gq6A	313	22.66	c.42.1.1	70341
2ho3A	325	23.37		
1wdcB	156	24.46	a.39.1.5	17302
2h36X	112	27.18		
1z82A	335	28.04		
2f6rA	281	31.68		
1vs0A	310	33.10		
2cfmA	561	33.10		
2ja9A	175	33.62		
2hmaA	376	34.35		
2fbhA	146	35.35	a.4.5.28	133245
2cx5A	158	35.50		
1rw1A	114	35.69	c.47.1.12	111945
1a8yA	367	37.94	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1t6sA	162	40.53	a.4.5.60,a.4.5.60	112271,112272
1ywqA	200	42.67	d.90.1.1	124162
2z0xA	158	45.38		
1vjfA	180	46.63	d.116.1.1	100809
2pttB	112	47.48		
1luzA	88	52.26	b.40.4.5	74271
2freA	200	52.36	d.90.1.1	133985
2guzA	71	52.39		
2ef5A	290	52.61		
1tu3F	79	54.39	h.1.27.2	112644
2glxA	332	55.97		
1zzkA	82	57.16	d.51.1.1	125909
1z6fA	363	57.68	b.105.1.1,e.3.1.1	124520,124521
1lc0A	294	57.74	c.2.1.3,d.81.1.4	73823,73824
2dxaA	166	58.81		
2b67A	204	60.43	d.90.1.1	127970
2cx1A	187	63.13	b.122.1.1,d.17.6.4	130967,130968
1tltA	319	63.90	c.2.1.3,d.81.1.5	107135,107136
2gb4A	252	64.88		
2q6mA	212	68.78		
2uyoA	310	69.23		
3bemA	218	71.17		
1f5vA	240	73.39	d.90.1.1	40255
2q0xA	335	74.15		
2iskA	230	75.39		
1d7qA	143	77.08	b.40.4.5	25331
2cmuA	342	77.89		
2bt2A	161	78.16		
3c7jA	237	79.02		
1noxA	205	79.23	d.90.1.1	40242
1dbxA	158	79.37	d.116.1.1	40928
1o1zA	234	81.25	c.1.18.3	86555
1wdvA	152	81.69	d.116.1.1	114539
2hy5A	130	84.70	c.114.1.1	136865
2jerA	389	88.17		
2ijcA	145	88.90	a.152.1.3	137465