# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	5.18e-13	d.98.1.1	134541
1jtgB	165	7.33e-13	d.98.1.1	67267
1u6eA	335	5.470	c.95.1.2,c.95.1.2	119568,119569
2o8xA	70	11.65		
1dliA	402	12.37	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2qdrA	303	13.66		
2h27A	73	14.67	a.4.13.2	135993
2ja9A	175	15.57		
1gq6A	313	15.87	c.42.1.1	70341
2grjA	192	18.09		
2oxgB	124	19.62		
1wdcB	156	19.72	a.39.1.5	17302
2a0mA	316	20.25	c.42.1.1	125960
2fbhA	146	20.34	a.4.5.28	133245
2f6rA	281	23.56		
2ho3A	325	24.06		
1rw1A	114	24.75	c.47.1.12	111945
1z82A	335	25.63		
1vd6A	224	26.68	c.1.18.3	119991
1j3wA	163	26.76	d.110.7.1	90833
2hmaA	376	29.45		
2pttB	112	32.07		
1ywqA	200	34.35	d.90.1.1	124162
3c7jA	237	35.86		
2q6mA	212	37.96		
2cx5A	158	38.39		
1tiwA	602	38.52	a.176.1.1,c.1.23.2	112430,112431
2qhkA	174	40.50		
2ef5A	290	40.90		
1f5vA	240	41.92	d.90.1.1	40255
2z0xA	158	43.87		
1zzkA	82	43.90	d.51.1.1	125909
2iskA	230	44.37		
2freA	200	44.55	d.90.1.1	133985
1t6sA	162	44.82	a.4.5.60,a.4.5.60	112271,112272
2b67A	204	45.40	d.90.1.1	127970
1noxA	205	45.62	d.90.1.1	40242
3bemA	218	46.81		
1a8yA	367	47.63	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2guzA	71	47.93		
1tu3F	79	55.52	h.1.27.2	112644
2glxA	332	56.45		
1lc0A	294	56.92	c.2.1.3,d.81.1.4	73823,73824
2dxaA	166	57.09		
1vjfA	180	59.11	d.116.1.1	100809
1vhtA	218	59.67	c.37.1.1	100700
2cx1A	187	59.97	b.122.1.1,d.17.6.4	130967,130968
1nox	205	66.08		
2uyoA	310	66.54		
1vs0A	310	68.87		
1dbxA	158	69.65	d.116.1.1	40928
2gb4A	252	70.09		
2p2rA	76	70.90		
2cfmA	561	71.39		
1qlwA	328	72.30	c.69.1.15	34722
1tltA	319	75.17	c.2.1.3,d.81.1.5	107135,107136
2bt2A	161	77.33		
1zchA	255	78.98	d.90.1.1	124908
2r01A	210	81.42		
1wdvA	152	82.79	d.116.1.1	114539
2veoA	441	84.02		
1ykiA	217	84.09	d.90.1.1	123520
1a58A	177	86.05	b.62.1.1	27495
1f46A	140	88.24	d.129.4.1	59643
2q88A	257	88.84		
1z6fA	363	89.59	b.105.1.1,e.3.1.1	124520,124521
1bkjA	240	89.65	d.90.1.1	40243