# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	4.27e-13	d.98.1.1	134541
1jtgB	165	6.18e-13	d.98.1.1	67267
1u6eA	335	4.332	c.95.1.2,c.95.1.2	119568,119569
1dliA	402	11.28	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2o8xA	70	13.59		
2ja9A	175	15.00		
1wdcB	156	15.23	a.39.1.5	17302
2oxgB	124	15.67		
2h27A	73	17.59	a.4.13.2	135993
2grjA	192	18.20		
2hmaA	376	19.44		
1vd6A	224	19.82	c.1.18.3	119991
2qdrA	303	21.35		
1gq6A	313	22.24	c.42.1.1	70341
1z82A	335	22.74		
1rw1A	114	25.09	c.47.1.12	111945
2pttB	112	25.63		
2a0mA	316	26.27	c.42.1.1	125960
2f6rA	281	26.85		
2fbhA	146	27.33	a.4.5.28	133245
2ho3A	325	28.38		
1j3wA	163	34.19	d.110.7.1	90833
1a8yA	367	35.36	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1tiwA	602	36.43	a.176.1.1,c.1.23.2	112430,112431
1t6sA	162	38.68	a.4.5.60,a.4.5.60	112271,112272
1zzkA	82	41.28	d.51.1.1	125909
2q6mA	212	42.92		
1ywqA	200	43.95	d.90.1.1	124162
2qhkA	174	46.13		
2cx5A	158	47.47		
3c7jA	237	47.92		
2uyoA	310	50.39		
2freA	200	51.12	d.90.1.1	133985
1tu3F	79	51.52	h.1.27.2	112644
2z0xA	158	51.64		
2ef5A	290	51.76		
1vhtA	218	52.18	c.37.1.1	100700
2b67A	204	54.11	d.90.1.1	127970
1noxA	205	56.61	d.90.1.1	40242
1f5vA	240	57.02	d.90.1.1	40255
2guzA	71	57.55		
2dxaA	166	57.88		
3bemA	218	58.44		
2iskA	230	60.75		
2gb4A	252	61.96		
2veoA	441	63.99		
2glxA	332	71.40		
2cfmA	561	72.92		
1tltA	319	73.87	c.2.1.3,d.81.1.5	107135,107136
2p2rA	76	73.91		
1dbxA	158	74.09	d.116.1.1	40928
2cx1A	187	74.51	b.122.1.1,d.17.6.4	130967,130968
1a58A	177	75.99	b.62.1.1	27495
1d7qA	143	76.12	b.40.4.5	25331
2bt2A	161	76.98		
1nox	205	77.45		
1vjfA	180	80.00	d.116.1.1	100809
1o1zA	234	80.73	c.1.18.3	86555
1vs0A	310	81.03		
2h36X	112	81.51		
1luzA	88	81.67	b.40.4.5	74271
1ei5A	520	83.33	b.61.3.1,b.61.3.1,e.3.1.1	27418,27419,42772
1z6fA	363	83.77	b.105.1.1,e.3.1.1	124520,124521
1a8y	367	84.80		
1f46A	140	87.12	d.129.4.1	59643
2ijcA	145	88.15	a.152.1.3	137465
1lc0A	294	88.83	c.2.1.3,d.81.1.4	73823,73824
2bzeA	153	89.53		
2hy5A	130	89.64	c.114.1.1	136865