# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	3.39e-10	d.98.1.1	134541
1jtgB	165	4.98e-10	d.98.1.1	67267
2o8xA	70	15.78		
1wdcB	156	16.26	a.39.1.5	17302
2h27A	73	18.14	a.4.13.2	135993
1nu4A	97	20.38	d.58.7.1	80731
2h36X	112	21.57		
2oxgB	124	22.49		
1wdvA	152	25.52	d.116.1.1	114539
1l3kA	196	27.40	d.58.7.1,d.58.7.1	73539,73540
1t6sA	162	27.96	a.4.5.60,a.4.5.60	112271,112272
2grjA	192	34.13		
1kqqA	139	39.13	a.4.3.1	72885
2fbhA	146	44.02	a.4.5.28	133245
1a9nB	96	44.99	d.58.7.1	39165
1vz0A	230	46.10	a.4.14.1,d.268.1.1	108929,108930
3boqA	160	47.36		
2nscA	109	50.32		
2bt2A	161	50.54		
1rw1A	114	52.95	c.47.1.12	111945
2cro	71	53.56		
2ef8A	84	53.88		
2b5aA	77	55.35	a.35.1.3	127882
2croA	71	56.15	a.35.1.2	17038
1ku3A	73	56.41	a.4.13.2	73000
3c7jA	237	57.39		
1yk3A	210	57.96	d.108.1.1	123493
2z0tA	109	60.57		
2guzA	71	63.22		
1gq6A	313	63.68	c.42.1.1	70341
2f6rA	281	66.07		
2dxaA	166	71.29		
1adrA	76	72.07	a.35.1.2	17042
1t95A	240	72.71	a.5.8.1,d.235.1.2,d.58.11.3	106705,106706,106707
1maiA	131	72.78	b.55.1.1	26951
1mai	131	74.27		
2pv7A	298	75.79		
2h09A	155	76.59		
2p2rA	76	78.30		
1wlzA	105	79.18	a.39.1.7	121024
3broA	141	79.32		
2pbyA	308	80.27		
2z0xA	158	81.11		
1yvwA	115	83.25	a.204.1.4	124122
1vjfA	180	83.38	d.116.1.1	100809
2ef5A	290	84.44		
1zzkA	82	85.21	d.51.1.1	125909
2o38A	120	85.95		
1vkiA	181	88.46	d.116.1.1	108664
2q6mA	212	88.62