# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 1.19e-11 d.98.1.1 134541 1jtgB 165 2.03e-11 d.98.1.1 67267 3coxA 507 1.883 c.3.1.2,d.16.1.1 30332,37863 2p8bA 369 2.499 1bu6O 501 3.123 c.55.1.4,c.55.1.4 33499,33500 1w0pA 781 3.298 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1tltA 319 3.335 c.2.1.3,d.81.1.5 107135,107136 2qdrA 303 4.357 1n4wA 504 4.580 c.3.1.2,d.16.1.1 91676,91677 2obhA 143 4.707 2z0xA 158 5.414 1v7wA 807 6.135 a.102.1.4,b.30.5.3 108411,108412 1nrwA 288 6.616 c.108.1.10 86128 1aosA 464 7.499 a.127.1.1 19414 1r17A 343 7.814 b.2.3.4,b.2.3.4 96796,96797 2ghpA 292 7.867 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2dkhA 639 10.24 1ojjA 402 10.27 b.29.1.10 93130 1mtyD 512 10.62 a.25.1.2 16742 1z82A 335 12.78 1ek6A 348 13.42 c.2.1.2 29800 1v4vA 376 13.54 c.87.1.3 100313 1vjfA 180 13.75 d.116.1.1 100809 2oxgB 124 14.09 1yewA 382 14.95 1f1uA 323 15.15 d.32.1.3,d.32.1.3 83200,83201 1w85A 368 18.04 c.36.1.11 114335 2fbhA 146 18.75 a.4.5.28 133245 1xesA 413 21.34 2o5gA 148 22.46 1r13A 148 22.97 d.169.1.1,h.1.1.1 96782,96783 2r01A 210 23.43 1j3wA 163 25.07 d.110.7.1 90833 1vd6A 224 26.85 c.1.18.3 119991 2q4aA 330 27.10 b.82.2.8 139839 1ggzA 148 27.27 a.39.1.5 70176 3boqA 160 28.00 2z1mA 345 28.09 2f7lA 455 28.62 2pyxA 526 29.30 2qvwA 756 30.80 2ad6A 571 32.79 b.70.1.1 126568 2c1xA 456 33.16 1b7yB 785 33.39 a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,b.153.1.1 16301,16302,25312,39311,40780,41456 1peqA 714 33.70 a.98.1.1,c.7.1.2 104131,104132 2hi2A 158 34.76 2cx5A 158 35.93 1h6vA 499 36.99 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1wdcB 156 37.33 a.39.1.5 17302 2i3oA 516 38.24 d.153.1.6 137027 2boqA 331 38.78 2awpA 198 39.34 1eg5A 384 40.06 c.67.1.3 34429 1kjqA 391 41.09 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2nu8B 388 41.09 1ztuA 341 41.14 1u6eA 335 42.41 c.95.1.2,c.95.1.2 119568,119569 1phkA 298 42.53 d.144.1.7 41635 2gu1A 361 42.88 2o8xA 70 42.93 2hmaA 376 43.07 1f0xA 571 43.69 d.58.32.2,d.145.1.1 39483,41746 2gf3A 389 43.76 c.3.1.2,d.16.1.3 135070,135071 2or4A 709 43.96 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2b67A 204 44.65 d.90.1.1 127970 1f46A 140 45.36 d.129.4.1 59643 2chuA 296 46.26 c.92.2.4 130485 1udcA 338 47.16 c.2.1.2 29785 1y0zA 330 47.26 b.82.2.8 116317 1b63A 333 47.71 d.14.1.3,d.122.1.2 37566,41107 2r7dA 469 48.12 2h27A 73 48.15 a.4.13.2 135993 3bi1A 709 50.25 2p2sA 336 50.27 2cvzA 289 50.40 a.100.1.1,c.2.1.6 130890,130891 1gvjA 146 50.52 a.4.5.21 90525 1yhtA 367 51.93 c.1.8.6 123213 3bemA 218 52.03 2bv6A 142 52.20 2e18A 257 52.26 1pn0A 665 53.27 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2o9cA 342 53.66 2pdrA 149 54.00 1oacA 727 55.53 b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1ru3A 732 55.80 e.26.1.3 97835 2rh1A 500 57.62 1k0wA 231 58.54 c.74.1.1 77220 1nw1A 429 59.05 d.144.1.8 86286 2f6rA 281 60.37 2btzA 394 62.21 1f1xA 322 63.40 d.32.1.3,d.32.1.3 83208,83209 1my6A 199 63.70 a.2.11.1,d.44.1.1 85232,85233 2e58A 308 63.87 2cmuA 342 63.95 2dnjA 260 66.21 d.151.1.1 41790 2bl0C 142 66.43 2grjA 192 66.78 2iskA 230 68.74 2olnA 397 69.63 1tuoA 464 70.11 2gv5A 161 70.15 1qazA 351 70.67 a.102.3.1 18848 1hnjA 317 72.14 c.95.1.2,c.95.1.2 35969,35970 1zrnA 232 75.16 c.108.1.1 43323 1w7jA 795 75.85 b.34.3.1,c.37.1.9 120688,120689 2ja9A 175 77.14 2h1yA 321 77.42 1rydA 387 77.76 c.2.1.3,d.81.1.5 118801,118802 2cfmA 561 78.96 2rebA 352 79.00 c.37.1.11,d.48.1.1 32282,38767 1f5vA 240 79.77 d.90.1.1 40255 3b79A 129 80.79 1rroA 108 80.85 a.39.1.4 17195 2r00A 336 81.70 3bs6A 280 82.72 2imhA 231 83.06 1t6sA 162 83.26 a.4.5.60,a.4.5.60 112271,112272 1qlwA 328 84.17 c.69.1.15 34722 2vafA 378 84.83 1a76 326 84.84 2pliA 91 84.92 1rw1A 114 86.70 c.47.1.12 111945 1enfA 212 87.37 b.40.2.2,d.15.6.1 25198,37787 2fp4B 395 87.73 c.23.4.1,d.142.1.4 133897,133898 1nnlA 225 89.34 c.108.1.4 85906