# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	3.71e-12	d.98.1.1	67267
2g2uB	165	4.74e-12	d.98.1.1	134541
1u6eA	335	7.364	c.95.1.2,c.95.1.2	119568,119569
1dliA	402	12.68	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2hmaA	376	14.59		
2fbhA	146	14.73	a.4.5.28	133245
2ho3A	325	15.02		
1wdcB	156	16.79	a.39.1.5	17302
2o8xA	70	18.64		
2grjA	192	19.56		
2h27A	73	19.80	a.4.13.2	135993
2oxgB	124	20.43		
2cx5A	158	21.46		
2ghpA	292	22.08	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
2ja9A	175	23.40		
1z82A	335	26.86		
1vjfA	180	27.56	d.116.1.1	100809
2qdrA	303	28.57		
2f6rA	281	29.28		
1t6sA	162	33.98	a.4.5.60,a.4.5.60	112271,112272
2z0xA	158	34.15		
2pttB	112	34.23		
2a0mA	316	34.76	c.42.1.1	125960
3bemA	218	36.88		
1j3wA	163	37.50	d.110.7.1	90833
1gq6A	313	37.85	c.42.1.1	70341
1qlwA	328	40.00	c.69.1.15	34722
1rw1A	114	40.95	c.47.1.12	111945
1vhtA	218	41.23	c.37.1.1	100700
1vd6A	224	43.70	c.1.18.3	119991
2q6mA	212	44.88		
2pliA	91	45.22		
2iskA	230	45.29		
2dxaA	166	45.44		
1v4sA	455	45.56	c.55.1.3,c.55.1.3	100309,100310
1a8yA	367	46.13	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2guzA	71	48.25		
2ef5A	290	48.65		
1tltA	319	54.53	c.2.1.3,d.81.1.5	107135,107136
1f5vA	240	55.97	d.90.1.1	40255
2uyoA	310	61.12		
1tiwA	602	61.74	a.176.1.1,c.1.23.2	112430,112431
1uw4A	91	62.20	d.58.7.4	100071
2freA	200	63.01	d.90.1.1	133985
1zzkA	82	63.39	d.51.1.1	125909
2cx1A	187	64.10	b.122.1.1,d.17.6.4	130967,130968
1ywqA	200	65.04	d.90.1.1	124162
2bzeA	153	69.66		
3boqA	160	69.95		
2b67A	204	72.86	d.90.1.1	127970
1zh8A	340	73.30	c.2.1.3,d.81.1.5	125077,125078
1zchA	255	73.99	d.90.1.1	124908
3c7jA	237	76.50		
2j58A	359	77.34		
1tu3F	79	81.05	h.1.27.2	112644
1dbxA	158	81.96	d.116.1.1	40928
1wrjA	156	84.85		
1wdvA	152	87.12	d.116.1.1	114539
2r01A	210	87.59		
1o1zA	234	87.95	c.1.18.3	86555