# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	8.30e-14	d.98.1.1	67267
2g2uB	165	8.50e-14	d.98.1.1	134541
1dliA	402	7.511	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
1u6eA	335	11.95	c.95.1.2,c.95.1.2	119568,119569
2oxgB	124	14.26		
2a0mA	316	14.53	c.42.1.1	125960
2fbhA	146	17.60	a.4.5.28	133245
1wdcB	156	19.53	a.39.1.5	17302
2hmaA	376	23.38		
2f6rA	281	27.13		
1vd6A	224	27.84	c.1.18.3	119991
2qdrA	303	28.68		
1gq6A	313	29.15	c.42.1.1	70341
2q6mA	212	30.14		
2o8xA	70	30.99		
2bzeA	153	31.86		
2h27A	73	32.00	a.4.13.2	135993
2pttB	112	35.56		
2grjA	192	35.83		
2veoA	441	37.64		
2gb4A	252	37.87		
1tiwA	602	38.77	a.176.1.1,c.1.23.2	112430,112431
1t6sA	162	39.12	a.4.5.60,a.4.5.60	112271,112272
1z82A	335	39.22		
2ghpA	292	48.54	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
3boqA	160	50.12		
2ef5A	290	52.00		
2ijcA	145	52.86	a.152.1.3	137465
1rw1A	114	53.38	c.47.1.12	111945
1j3wA	163	53.84	d.110.7.1	90833
1qlwA	328	55.34	c.69.1.15	34722
2iskA	230	57.04		
2ja9A	175	57.46		
1ywqA	200	57.74	d.90.1.1	124162
1vjfA	180	58.05	d.116.1.1	100809
2uyoA	310	59.18		
2cfmA	561	59.28		
2dxaA	166	60.77		
1f5vA	240	60.83	d.90.1.1	40255
1a8yA	367	61.70	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
3c7jA	237	62.08		
2o4dA	165	63.48	a.152.1.3	138907
1vhtA	218	64.53	c.37.1.1	100700
1tu3F	79	64.55	h.1.27.2	112644
2ho3A	325	64.78		
2guzA	71	66.21		
2z0dA	357	67.43		
2b67A	204	73.80	d.90.1.1	127970
2hd5A	359	77.18		
1o1zA	234	81.25	c.1.18.3	86555
2p1mA	163	82.86		
2pv7A	298	88.87