# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	9.71e-13	d.98.1.1	67267
2g2uB	165	1.06e-12	d.98.1.1	134541
2oxgB	124	10.05		
2h27A	73	16.87	a.4.13.2	135993
1wdcB	156	19.07	a.39.1.5	17302
1vd6A	224	22.80	c.1.18.3	119991
2fbhA	146	23.12	a.4.5.28	133245
1dliA	402	24.65	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2o8xA	70	26.23		
2grjA	192	26.84		
1t6sA	162	27.10	a.4.5.60,a.4.5.60	112271,112272
2f6rA	281	27.78		
2ho3A	325	29.62		
1z82A	335	31.12		
2a0mA	316	33.62	c.42.1.1	125960
1vjfA	180	34.15	d.116.1.1	100809
1gq6A	313	34.36	c.42.1.1	70341
1u6eA	335	38.10	c.95.1.2,c.95.1.2	119568,119569
1a8yA	367	42.66	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
2iskA	230	45.67		
2gb4A	252	49.29		
1zzkA	82	51.44	d.51.1.1	125909
1rw1A	114	53.48	c.47.1.12	111945
1ywqA	200	53.62	d.90.1.1	124162
1rxwA	336	53.83	a.60.7.1,c.120.1.2	98059,98060
2dxaA	166	56.09		
2guzA	71	57.90		
1a76	326	58.22		
1tu3F	79	60.26	h.1.27.2	112644
1luzA	88	61.13	b.40.4.5	74271
1o1zA	234	63.35	c.1.18.3	86555
2ijcA	145	64.28	a.152.1.3	137465
2qdrA	303	67.38		
2o4dA	165	67.38	a.152.1.3	138907
2ef5A	290	67.57		
2ghpA	292	67.96	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1vhtA	218	68.96	c.37.1.1	100700
2r01A	210	69.19		
2cx5A	158	69.33		
3bemA	218	71.24		
1v4sA	455	71.39	c.55.1.3,c.55.1.3	100309,100310
2q6mA	212	71.70		
1j3wA	163	71.98	d.110.7.1	90833
1ta8A	332	72.21	d.142.2.2	112375
2a35A	215	73.75	c.2.1.2	126072
1wnaA	131	73.81	d.319.1.1	121091
1c1dA	355	74.15	c.2.1.7,c.58.1.1	30270,33918
2r7dA	469	74.85		
2b67A	204	77.44	d.90.1.1	127970
1noxA	205	78.19	d.90.1.1	40242
1vs0A	310	79.42		
2bh1X	96	81.22		
1lc0A	294	83.17	c.2.1.3,d.81.1.4	73823,73824
3c7jA	237	83.34		
1ku3A	73	87.07	a.4.13.2	73000
1y8aA	332	87.89		
1a8y	367	87.98		
1fn9A	365	88.88	d.196.1.1	59894
1tiwA	602	89.88	a.176.1.1,c.1.23.2	112430,112431