# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	5.94e-13	d.98.1.1	67267
2g2uB	165	7.08e-13	d.98.1.1	134541
1dliA	402	10.48	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2oxgB	124	14.84		
2grjA	192	16.05		
2fbhA	146	19.12	a.4.5.28	133245
2ghpA	292	19.29	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
2o8xA	70	19.55		
2h27A	73	19.88	a.4.13.2	135993
1vd6A	224	19.92	c.1.18.3	119991
2f6rA	281	20.68		
2a0mA	316	20.88	c.42.1.1	125960
1u6eA	335	22.06	c.95.1.2,c.95.1.2	119568,119569
1wdcB	156	24.93	a.39.1.5	17302
1z82A	335	25.90		
1gq6A	313	33.78	c.42.1.1	70341
1rw1A	114	34.93	c.47.1.12	111945
2ef5A	290	36.32		
2hmaA	376	36.73		
1vjfA	180	37.40	d.116.1.1	100809
2bzeA	153	38.14		
2qdrA	303	38.65		
2ho3A	325	38.77		
1t6sA	162	41.47	a.4.5.60,a.4.5.60	112271,112272
2gb4A	252	46.29		
2cx5A	158	50.50		
1j3wA	163	54.30	d.110.7.1	90833
2cx1A	187	54.87	b.122.1.1,d.17.6.4	130967,130968
1vhtA	218	55.13	c.37.1.1	100700
2b67A	204	55.88	d.90.1.1	127970
2iskA	230	58.80		
2guzA	71	61.18		
2ja9A	175	61.51		
1o1zA	234	62.91	c.1.18.3	86555
2dxaA	166	63.19		
2ijcA	145	65.18	a.152.1.3	137465
1vs0A	310	66.38		
1fn9A	365	67.98	d.196.1.1	59894
2cfmA	561	68.85		
3bemA	218	74.19		
2o4dA	165	74.55	a.152.1.3	138907
1wnaA	131	79.14	d.319.1.1	121091
2z0dA	357	79.51		
2z0xA	158	80.18		
1rxwA	336	81.00	a.60.7.1,c.120.1.2	98059,98060
1a8yA	367	83.59	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1tu3F	79	83.86	h.1.27.2	112644
2veoA	441	84.32		
2hy5A	130	85.20	c.114.1.1	136865
1ku3A	73	85.58	a.4.13.2	73000
2q6mA	212	85.88		
2pttB	112	86.22		
1wdvA	152	87.22	d.116.1.1	114539
1y8aA	332	88.24		
3c7jA	237	88.49		
1a76	326	88.93		
1oo0B	110	89.14	d.58.7.1	87183
1lc0A	294	89.64	c.2.1.3,d.81.1.4	73823,73824