# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	6.42e-11	d.98.1.1	134541
1jtgB	165	6.46e-11	d.98.1.1	67267
2h27A	73	18.56	a.4.13.2	135993
2o8xA	70	18.99		
1qlwA	328	19.47	c.69.1.15	34722
2h36X	112	20.31		
1kqqA	139	22.75	a.4.3.1	72885
1dliA	402	27.68	a.100.1.4,c.2.1.6,c.26.3.1	18809,30213,31622
2grjA	192	29.18		
2fbhA	146	33.01	a.4.5.28	133245
2oxgB	124	38.27		
2f6rA	281	38.98		
2ijcA	145	39.96	a.152.1.3	137465
3boqA	160	43.25		
1zzkA	82	44.62	d.51.1.1	125909
2p2rA	76	47.49		
2cx5A	158	52.37		
1z82A	335	53.16		
1lki	180	53.66		
2dxaA	166	57.51		
1wdvA	152	59.04	d.116.1.1	114539
1vjfA	180	60.28	d.116.1.1	100809
2q0xA	335	62.23		
2h8gA	267	65.72		
1nu4A	97	69.78	d.58.7.1	80731
1ggzA	148	70.16	a.39.1.5	70176
1zuhA	168	70.54		
2o4dA	165	71.28	a.152.1.3	138907
1wdcB	156	74.71	a.39.1.5	17302
1rw1A	114	76.45	c.47.1.12	111945
2bt2A	161	80.40		
1oo0B	110	83.37	d.58.7.1	87183
1fp1D	372	86.90	a.4.5.29,c.66.1.12	59939,59940
2pbfA	227	87.00		
1fn9A	365	89.56	d.196.1.1	59894