# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	3.45e-09	d.98.1.1	134541
1jtgB	165	5.97e-09	d.98.1.1	67267
1l3kA	196	0.2160	d.58.7.1,d.58.7.1	73539,73540
1fxlA	167	1.124	d.58.7.1,d.58.7.1	39183,39184
2qfjA	216	1.981		
1zh5A	195	2.454	a.4.5.46,d.58.7.1	125073,125074
2o38A	120	5.632		
2b5aA	77	14.38	a.35.1.3	127882
1repC	251	15.87	a.4.5.10,a.4.5.10	16125,16126
2gfaA	119	16.86	b.34.9.1,b.34.9.1	135089,135090
1wp5A	323	17.34	b.68.10.1	114780
2e5aA	347	17.60		
3grsA	478	18.30	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
1x2gA	337	20.38		
1wdcB	156	21.69	a.39.1.5	17302
2croA	71	23.13	a.35.1.2	17038
1ta8A	332	23.29	d.142.2.2	112375
1wdvA	152	25.11	d.116.1.1	114539
2a6cA	83	25.79	a.35.1.13	126236
2ej9A	237	26.37		
1r69A	69	26.80	a.35.1.2	17028
2cro	71	28.09		
1r69	69	29.39		
2b67A	204	30.11	d.90.1.1	127970
1t6sA	162	31.53	a.4.5.60,a.4.5.60	112271,112272
1y7yA	74	32.83	a.35.1.3	122729
1gx1A	160	34.33	d.79.5.1	70675
1n4aA	252	34.58	c.92.2.2	85317
2yvyA	278	34.74		
1hyeA	313	35.02	c.2.1.5,d.162.1.1	61400,61401
2hxrA	238	35.09		
3caxA	369	35.26		
2r9zA	463	35.27		
2qhsA	237	35.60		
1a0rP	245	35.74	c.47.1.6	33054
2ghpA	292	36.58	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
3b7hA	78	39.63		
3c7jA	237	40.04		
1b3tA	147	40.09	d.58.8.1	39228
1t5jA	313	41.23	a.209.1.1	99125
1yb3A	175	41.40	d.296.1.2	122869
1suuA	312	42.14	b.68.10.1	99006
2ewtA	71	44.18		
2v0hA	456	44.92		
3bpuA	88	44.96		
1ka1A	357	46.24	e.7.1.1	68369
2h36X	112	48.83		
1s6lA	212	51.54		
1iv3A	152	51.64	d.79.5.1	76828
3bemA	218	52.60		
1adrA	76	54.58	a.35.1.2	17042
1t0aA	159	54.72	d.79.5.1	112192
1e43A	483	55.20	b.71.1.1,c.1.8.1	59217,59218
3bjuA	521	55.95		
2czrA	226	55.95		
2gruA	368	56.62		
2ef8A	84	58.89		
2d4gA	171	60.03		
3cloA	258	60.33		
2dbbA	151	60.71		
1fxjA	331	61.05	b.81.1.4,c.68.1.5	28062,34520
1hkqA	132	62.45	a.4.5.10	83555
2pfiA	164	66.39		
2z99A	219	66.45		
1m12A	84	67.56	a.64.1.1	84745
1ez4A	318	68.84	c.2.1.5,d.162.1.1	64917,64918
2vapA	364	69.39		
3broA	141	69.98		
2cmdA	312	72.65	c.2.1.5,d.162.1.1	30135,42102
1r8sE	203	73.56	a.118.3.1	97248
2uzhA	165	75.16		
1utxA	66	77.28	a.35.1.3	108034
3bqpA	80	78.52		
1ggzA	148	81.24	a.39.1.5	70176
2he4A	90	82.27		
2d3jA	157	82.38		
2cg4A	152	82.95	a.4.5.32,d.58.4.2	130417,130418
2ggtA	164	84.02	c.47.1.10	135156
1hr6A	475	84.27	d.185.1.1,d.185.1.1	61164,61165
2cxiA	348	87.03		
2z2mC	125	89.24		
1dzfA	215	89.62	c.52.3.1,d.78.1.1	33344,39753