Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2g2uB/T0399-2g2uB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g2uB/T0399-2g2uB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0289e-098.12e-55 d.98.1.1
1xxmC/T0399-1xxmC-t04-global-adpstyle1.a2m 1xxmC/T0399-1xxmC-t04-global-adpstyle1.al 4.7207e-047.33e-23
2pxgA/T0399-2pxgA-t04-global-adpstyle1.a2m 2pxgA/T0399-2pxgA-t04-global-adpstyle1.al 2.4129e-016.39e-06
2h36X/T0399-2h36X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2h36X/T0399-2h36X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5520e-011.10e-13
1wdvA/T0399-1wdvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdvA/T0399-1wdvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1615e+003.08e-13 d.116.1.1
1h6vA/T0399-1h6vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6vA/T0399-1h6vA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5245e+005.86e-08 3grs c.3.1.5
c.3.1.5
d.87.1.1
1zh5A/T0399-1zh5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zh5A/T0399-1zh5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8228e+001.22e-20 a.4.5.46
d.58.7.1
1ta8A/T0399-1ta8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ta8A/T0399-1ta8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8082e+001.99e-12 d.142.2.2
2yvyA/T0399-2yvyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yvyA/T0399-2yvyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6726e+003.49e-14
1ucrA/T0399-1ucrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ucrA/T0399-1ucrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1831e+001.66e-09 a.4.5.45

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001