Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2g2uB/T0399-2g2uB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g2uB/T0399-2g2uB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7654e-066.42e-39 d.98.1.1
2h36X/T0399-2h36X-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2h36X/T0399-2h36X-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9387e-011.40e-09
1xxmC/T0399-1xxmC-t2k-global-adpstyle1.a2m 1xxmC/T0399-1xxmC-t2k-global-adpstyle1.al 7.0466e-016.57e-13
2pxgA/T0399-2pxgA-t2k-local-adpstyle1.a2m 2pxgA/T0399-2pxgA-t2k-local-adpstyle1.al 2.6337e+009.16e-04
2pbiB/T0399-2pbiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pbiB/T0399-2pbiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2571e+001.99e-11
1ucrA/T0399-1ucrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ucrA/T0399-1ucrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8113e+001.66e-09 a.4.5.45
1wdvA/T0399-1wdvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdvA/T0399-1wdvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4479e+003.08e-13 d.116.1.1
1zh5A/T0399-1zh5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zh5A/T0399-1zh5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1610e+017.72e-12 a.4.5.46
d.58.7.1
1ta8A/T0399-1ta8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ta8A/T0399-1ta8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2561e+011.99e-12 d.142.2.2
1b1gA/T0399-1b1gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b1gA/T0399-1b1gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7555e+019.27e-09 1psrA a.39.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001