# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jtgB 165 1.79e-07 d.98.1.1 67267 2g2uB 165 1.79e-07 d.98.1.1 134541 1wdvA 152 2.16e-01 d.116.1.1 114539 2h36X 112 2.69e-01 1b8aA 438 2.71e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 2j3mA 572 3.38e+00 1ucrA 78 3.85e+00 a.4.5.45 99188 1h6vA 499 3.92e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1j3wA 163 5.14e+00 d.110.7.1 90833 2afbA 351 6.25e+00 c.72.1.1 126674 2b0vA 153 6.81e+00 d.113.1.1 127650 2i0oA 304 6.97e+00 2amyA 246 7.02e+00 c.108.1.10 127026 1gweA 503 7.54e+00 e.5.1.1 70667 1zghA 260 7.65e+00 b.46.1.1,c.65.1.1 125028,125029 1ui7A 638 7.74e+00 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1hbzA 498 8.09e+00 1cf9A e.5.1.1 60937 1zh5A 195 8.42e+00 a.4.5.46,d.58.7.1 125073,125074 2g17A 337 9.46e+00 c.2.1.3,d.81.1.1 134512,134513 2iorA 235 9.55e+00 2oseA 234 9.68e+00 2grvA 621 1.04e+01 2c9wA 169 1.10e+01 2bjfA 329 1.22e+01 2oajA 902 1.32e+01 2a50B 168 1.35e+01 2gx9A 129 1.36e+01 d.299.1.1 135828 2cw9A 194 1.43e+01 d.17.4.13 130920 1a99A 344 1.49e+01 1pot c.94.1.1 35812 1ywuA 149 1.62e+01 b.45.2.1 124164 1b1gA 75 1.62e+01 1psrA a.39.1.1 17151 2fgtA 417 1.63e+01 2pbiB 354 1.71e+01 1pn2A 280 1.78e+01 d.38.1.4,d.38.1.4 94930,94931 1on3A 523 1.79e+01 c.14.1.4,c.14.1.4 87107,87108 2isbA 192 1.80e+01 c.8.9.1 137601 1zckA 154 1.84e+01 2z0xA 158 1.97e+01 2h8gA 267 2.06e+01 1c0pA 363 2.08e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2yvdA 431 2.14e+01 2j8qA 227 2.17e+01 1qnaA 200 2.17e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1plq 258 2.22e+01 1plq 1plqA 258 2.22e+01 d.131.1.2,d.131.1.2 41388,41389 1t17A 148 2.24e+01 d.129.3.6 112215 2cx5A 158 2.25e+01 2c60A 111 2.28e+01 d.15.2.2 129966 1j7jA 178 2.31e+01 c.61.1.1 84131 2fz0A 149 2.33e+01 2gjsA 176 2.47e+01 c.37.1.8 135287 2g09A 297 2.50e+01 2nvmA 126 2.53e+01 d.326.1.1 138631 2odiA 238 2.54e+01 1ikpA 613 2.65e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1h65A 270 2.65e+01 c.37.1.8 65640 2p36A 335 2.66e+01 1vjnA 220 2.71e+01 d.157.1.4 100825 2dkfA 431 2.72e+01 1rxdA 159 2.80e+01 c.45.1.1 111959 1tg7A 971 2.81e+01 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 2c2aA 258 2.98e+01 a.30.2.1,d.122.1.3 129662,129663 2q7eA 291 3.01e+01 2fueA 262 3.06e+01 c.108.1.10 134119 2gmqA 118 3.14e+01 1g99A 408 3.14e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 2glcA 342 3.15e+01 1zkiA 133 3.18e+01 d.38.1.5 125199 3bhoA 208 3.19e+01 1q0sA 259 3.20e+01 c.66.1.28 95509 2fziA 206 3.28e+01 c.71.1.1 134448 1ta8A 332 3.31e+01 d.142.2.2 112375 1jl0A 334 3.36e+01 1jenA d.156.1.1 63155 2dekA 265 3.37e+01 c.90.1.1 131430 1a49A 530 3.41e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2ib5A 233 3.42e+01 1v5rA 97 3.50e+01 d.82.4.1 119854 1xmzA 241 3.62e+01 1efpB 252 3.65e+01 1efvB c.26.2.3 31636 1d3uA 181 3.66e+01 1ytbA d.129.1.1,d.129.1.1 41290,41291 2aexA 346 3.69e+01 3bw8A 217 3.70e+01 1aapA 58 3.72e+01 1bpi g.8.1.1 44543 1phkA 298 3.72e+01 d.144.1.7 41635 2zceA 291 3.74e+01 2e0qA 104 3.83e+01 2ivfA 976 3.89e+01 2dpxA 174 3.89e+01 1hzgA 295 3.92e+01 1hzgA d.194.1.1 61436 2g6yA 217 3.97e+01 2o35A 105 4.02e+01 1r4aA 165 4.03e+01 c.37.1.8 96986 2bduA 297 4.07e+01 1vcoA 550 4.08e+01 c.23.16.1,c.37.1.10 108508,108509 1konA 249 4.10e+01 e.39.1.1 72823 1nox 205 4.14e+01 1nox 1noxA 205 4.14e+01 d.90.1.1 40242 1d7pM 159 4.25e+01 1cztA b.18.1.2 23718 2yvyA 278 4.25e+01 2dhoA 235 4.42e+01 1vz0A 230 4.56e+01 a.4.14.1,d.268.1.1 108929,108930 1hq0A 295 4.57e+01 1hzgA d.194.1.1 61122 1txdA 385 4.59e+01 a.87.1.1,b.55.1.1 107422,107423 3brbA 313 4.64e+01 1mc0A 368 4.64e+01 d.110.2.1,d.110.2.1 78937,78938 2bf5A 98 4.72e+01 d.137.1.1 128405 1aoeA 192 4.75e+01 1aoeA c.71.1.1 34923 1byqA 228 4.77e+01 1yer d.122.1.1 41100 1wxiA 275 4.81e+01 c.26.2.1 121400 1r69 69 4.87e+01 1r69 1r69A 69 4.87e+01 a.35.1.2 17028 1hlcA 129 4.89e+01 1c1lA b.29.1.3 24208 2d1wA 638 4.90e+01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2bc4B 211 4.95e+01 1iqyA 638 5.02e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 2q3pA 112 5.04e+01 d.58.4.4 139798 1yn3A 98 5.09e+01 2z10A 194 5.10e+01 1t64A 377 5.12e+01 c.42.1.2 106543 2dj5A 133 5.14e+01 c.92.1.3 131536 1hdmB 193 5.14e+01 1hdmB b.1.1.2,d.19.1.1 21584,38158 3c8cA 240 5.36e+01 3b8xA 390 5.45e+01 1lshA 1056 5.48e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2gmsA 390 5.54e+01 1zuhA 168 5.56e+01 2qg7A 458 5.73e+01 1e0bA 68 5.91e+01 1e0bA b.34.13.2 37476 1r6jA 82 5.94e+01 b.36.1.1 97151 1w6gA 646 5.95e+01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1u1sA 82 6.12e+01 b.38.1.2 119451 2d9rA 104 6.14e+01 b.129.2.1 131350 1ui8A 638 6.16e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 2oiwA 136 6.18e+01 1rg9A 383 6.20e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 2id0A 644 6.25e+01 1tib 269 6.25e+01 3tgl 1tibA 269 6.25e+01 c.69.1.17 34738 1ys1X 320 6.35e+01 2f22A 144 6.39e+01 a.213.1.2 132795 2gu3A 136 6.46e+01 1zud2 66 6.57e+01 2g50A 530 6.60e+01 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1i2mA 216 6.60e+01 1byuA c.37.1.8 61568 2fuvA 549 6.65e+01 1dlcA 584 6.70e+01 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2p19A 149 6.72e+01 1p3jA 217 6.72e+01 c.37.1.1,g.41.2.1 94022,94023 3c8wA 255 6.75e+01 2icjA 233 6.76e+01 1rqlA 267 6.77e+01 c.108.1.3 97750 1xw3A 110 6.86e+01 1yemA 179 6.89e+01 d.63.1.2 116646 2e8gA 241 6.96e+01 2e3bA 344 7.01e+01 a.93.1.1 132024 1qniA 581 7.04e+01 1qniA b.6.1.4,b.69.3.1 23042,27642 1zvdA 380 7.05e+01 1r5mA 425 7.10e+01 1f89A 291 7.16e+01 d.160.1.1 64988 1mvwC 147 7.18e+01 i.15.1.1 79525 1cauB 184 7.19e+01 1caxB b.82.1.2 28103 1cc1L 498 7.20e+01 1h2rL e.18.1.1 43301 1mx4A 168 7.41e+01 d.211.1.1 79640 1ogpA 393 7.43e+01 b.1.18.6,d.176.1.1 92927,92928 1swvA 267 7.46e+01 c.108.1.3 112134 2j4xA 213 7.49e+01 1zs9A 261 7.49e+01 c.108.1.22 125600 2oizD 135 7.51e+01 2agyD 135 7.51e+01 1ztcA 221 7.59e+01 d.157.1.11 125635 1j1jA 240 7.59e+01 a.118.16.1 90762 2rcyA 262 7.61e+01 1gq6A 313 7.62e+01 c.42.1.1 70341 1f60A 458 7.63e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1udiI 83 7.63e+01 1ugiA d.17.5.1 38124 1r1a1 287 7.64e+01 1aym1 1tuaA 191 7.76e+01 d.51.1.1,d.51.1.1 107321,107322 2hzmB 317 7.78e+01 2o2kA 355 7.92e+01 3sil 379 7.96e+01 3sil 3silA 379 7.96e+01 b.68.1.1 27542