# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g2uB 165 5.09e-07 d.98.1.1 134541 1jtgB 165 5.27e-07 d.98.1.1 67267 2h36X 112 2.06e-01 2fz0A 149 1.64e+00 1wdvA 152 2.44e+00 d.116.1.1 114539 2c2aA 258 2.65e+00 a.30.2.1,d.122.1.3 129662,129663 2reiA 318 3.73e+00 1ucrA 78 4.18e+00 a.4.5.45 99188 2i0oA 304 5.69e+00 1gq6A 313 6.21e+00 c.42.1.1 70341 1q0sA 259 7.60e+00 c.66.1.28 95509 1b1gA 75 9.23e+00 1psrA a.39.1.1 17151 1nmsA 249 9.30e+00 c.17.1.1 85879 2c9wA 169 1.02e+01 1cc1L 498 1.03e+01 1h2rL e.18.1.1 43301 1a99A 344 1.14e+01 1pot c.94.1.1 35812 1plq 258 1.16e+01 1plq 1plqA 258 1.16e+01 d.131.1.2,d.131.1.2 41388,41389 1j3wA 163 1.17e+01 d.110.7.1 90833 2edmA 161 1.18e+01 2iorA 235 1.35e+01 2afbA 351 1.40e+01 c.72.1.1 126674 1jofA 365 1.49e+01 b.69.10.1 71775 1h65A 270 1.58e+01 c.37.1.8 65640 2yugA 155 1.68e+01 2isbA 192 1.73e+01 c.8.9.1 137601 1v5rA 97 1.80e+01 d.82.4.1 119854 2cw9A 194 1.81e+01 d.17.4.13 130920 1zh5A 195 1.82e+01 a.4.5.46,d.58.7.1 125073,125074 1efpB 252 1.90e+01 1efvB c.26.2.3 31636 2f22A 144 1.91e+01 a.213.1.2 132795 2pbiB 354 1.97e+01 1vr6A 350 2.04e+01 c.1.10.4 120439 2glcA 342 2.06e+01 2gjsA 176 2.08e+01 c.37.1.8 135287 2g50A 530 2.18e+01 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2p36A 335 2.22e+01 1ud9A 245 2.22e+01 d.131.1.2,d.131.1.2 107768,107769 2j8qA 227 2.23e+01 1ecfB 504 2.24e+01 1ecfB c.61.1.1,d.153.1.1 34054,41821 1pn2A 280 2.32e+01 d.38.1.4,d.38.1.4 94930,94931 1a6dA 545 2.39e+01 1a6dA a.129.1.2,c.8.5.2,d.56.1.2 19488,30819,38936 2nvmA 126 2.40e+01 d.326.1.1 138631 1rxdA 159 2.44e+01 c.45.1.1 111959 1lshA 1056 2.45e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2dkoA 146 2.45e+01 1ecfA 504 2.48e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2g17A 337 2.55e+01 c.2.1.3,d.81.1.1 134512,134513 2b0vA 153 2.56e+01 d.113.1.1 127650 1j7jA 178 2.56e+01 c.61.1.1 84131 1zghA 260 2.57e+01 b.46.1.1,c.65.1.1 125028,125029 2d1wA 638 2.60e+01 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1zckA 154 2.61e+01 2gx9A 129 2.62e+01 d.299.1.1 135828 2oseA 234 2.63e+01 1ui8A 638 2.65e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 2bjfA 329 2.67e+01 1ui7A 638 2.72e+01 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 2h8gA 267 2.77e+01 1kcw 1046 2.89e+01 1kcw 1kcwA 1046 2.89e+01 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1tuaA 191 2.99e+01 d.51.1.1,d.51.1.1 107321,107322 1tib 269 3.04e+01 3tgl 1tibA 269 3.04e+01 c.69.1.17 34738 2odiA 238 3.05e+01 2joyA 96 3.07e+01 2fziA 206 3.15e+01 c.71.1.1 134448 1zclA 180 3.25e+01 1br1B 150 3.31e+01 1wdcC a.39.1.5 17309 2gu3A 136 3.34e+01 1konA 249 3.37e+01 e.39.1.1 72823 1ta8A 332 3.37e+01 d.142.2.2 112375 3bhoA 208 3.37e+01 1w6gA 646 3.43e+01 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 3brbA 313 3.44e+01 1qnaA 200 3.44e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1aoeA 192 3.49e+01 1aoeA c.71.1.1 34923 2olsA 794 3.52e+01 1b8aA 438 3.58e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2amyA 246 3.68e+01 c.108.1.10 127026 1ge8A 249 3.83e+01 1plq d.131.1.2,d.131.1.2 41398,41399 2okgA 255 3.94e+01 1b80A 351 3.95e+01 1arv a.93.1.1 18579 1b85A 351 4.05e+01 1arv a.93.1.1 18581 2j4xA 213 4.15e+01 2hb0A 369 4.31e+01 1cp3A 277 4.34e+01 1pauA c.17.1.1 30992 2yvyA 278 4.34e+01 2a6hC 1119 4.35e+01 e.29.1.1 126264 2bf5A 98 4.45e+01 d.137.1.1 128405 2aexA 346 4.46e+01 2z10A 194 4.66e+01 2yvdA 431 4.91e+01 1o97D 320 4.97e+01 c.26.2.3,c.31.1.2 81233,81234 2bkdN 134 4.98e+01 2ivfA 976 5.01e+01 1mvwC 147 5.03e+01 i.15.1.1 79525 1ughI 82 5.04e+01 1ugiA d.17.5.1 38133 2j3mA 572 5.06e+01 2oajA 902 5.24e+01 1t17A 148 5.37e+01 d.129.3.6 112215 1s7jA 262 5.41e+01 d.21.1.2 98647 1a49A 530 5.42e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1phkA 298 5.47e+01 d.144.1.7 41635 2c60A 111 5.49e+01 d.15.2.2 129966 1du6A 64 5.57e+01 1akhA a.4.1.1 16002 1whzA 70 5.58e+01 d.50.3.2 114656 3bw8A 217 5.64e+01 1d7pM 159 5.72e+01 1cztA b.18.1.2 23718 2dkfA 431 5.90e+01 2iskA 230 5.92e+01 1wjxA 122 6.17e+01 b.111.1.1 114716 2fueA 262 6.22e+01 c.108.1.10 134119 1hdmB 193 6.23e+01 1hdmB b.1.1.2,d.19.1.1 21584,38158 1ut1A 148 6.24e+01 b.2.3.6 108014 1vz0A 230 6.26e+01 a.4.14.1,d.268.1.1 108929,108930 2dj5A 133 6.43e+01 c.92.1.3 131536 1iqyA 638 6.48e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 2bc4B 211 6.53e+01 1v1hA 103 6.65e+01 b.83.1.1,h.1.17.1 108243,108244 2g6yA 217 6.66e+01 2o35A 105 6.68e+01 1eq3A 96 6.70e+01 1eq3A d.26.1.1 59486 1oi7A 288 6.75e+01 c.2.1.8,c.23.4.1 87049,87050 1x24A 180 6.86e+01 1rjoA 646 6.92e+01 b.30.2.1,d.17.2.1,d.17.2.1 111832,111833,111834 1tg7A 971 6.98e+01 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 1ueaB 184 7.14e+01 1br9 b.40.3.1 25232 1j8yF 297 7.15e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1c8oA 300 7.20e+01 1c8oA e.1.1.1 42677 1j8mF 297 7.29e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2f9dA 125 7.30e+01 d.58.7.1 133159 2rcyA 262 7.32e+01 1h6uA 308 7.44e+01 b.1.18.15,c.10.2.1 65688,65689 2ip2A 334 7.44e+01 1xd5A 112 7.47e+01 b.78.1.1 115155 1g8aA 227 7.54e+01 c.66.1.3 90506 2dpxA 174 7.63e+01 2d5wA 603 7.79e+01 1b26A 416 7.80e+01 1hwyA c.2.1.7,c.58.1.1 30232,33880 1b3bA 415 7.83e+01 1hwyA c.2.1.7,c.58.1.1 30244,33892 2e1bA 216 7.86e+01 1a03A 90 7.96e+01 4icb a.39.1.2 17157 1v6fA 151 7.96e+01 d.109.1.2 108395 1kluD 239 7.97e+01 b.40.2.2,d.15.6.1 72728,72729