# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g2uB 165 1.74e-06 d.98.1.1 134541 1jtgB 165 2.10e-06 d.98.1.1 67267 2h36X 112 2.22e-02 1vlaA 150 2.66e+00 d.227.1.2 108735 1squA 155 2.95e+00 d.252.1.1 98971 1ucrA 78 2.98e+00 a.4.5.45 99188 1v5sA 126 3.50e+00 d.129.6.1 108384 1w8xP 117 4.23e+00 i.6.1.1 114392 1pufB 73 4.36e+00 a.4.1.1 95132 2gu3A 136 5.00e+00 2pbiB 354 5.31e+00 2joyA 96 5.89e+00 2dkoA 146 6.52e+00 1t0tV 248 6.56e+00 d.58.4.10 106229 2gx9A 129 7.49e+00 d.299.1.1 135828 1wh8A 111 7.73e+00 a.35.1.7 114636 2e50A 225 8.55e+00 1hn6A 110 9.83e+00 g.61.1.1 76721 1v54I 73 1.01e+01 f.23.3.1 100330 2occI 73 1.08e+01 2occI f.23.3.1 43523 2r2iA 198 1.09e+01 1vdhA 249 1.20e+01 d.58.4.10 108523 1do0A 442 1.34e+01 1do0A c.37.1.20 32432 2e8oA 103 1.34e+01 1sppB 116 1.34e+01 1sfp b.23.1.1 23897 1b72B 87 1.34e+01 1akhA a.4.1.1 16001 1b9yC 246 1.47e+01 1b9yC c.47.1.6 33052 1ywuA 149 1.50e+01 b.45.2.1 124164 2axtI 38 1.50e+01 1vz0A 230 1.55e+01 a.4.14.1,d.268.1.1 108929,108930 2ijpA 268 1.75e+01 1slqA 278 1.86e+01 f.47.1.1 105719 1j1dB 106 1.89e+01 h.1.25.1 83964 2j0nA 200 1.89e+01 a.250.1.1 137899 1plq 258 1.90e+01 1plq 1plqA 258 1.90e+01 d.131.1.2,d.131.1.2 41388,41389 2f02A 323 2.00e+01 c.72.1.1 132649 1b8iB 63 2.11e+01 1akhA a.4.1.1 16011 1tqzA 133 2.14e+01 b.55.1.11 119327 1b9xC 246 2.25e+01 1b9yC c.47.1.6 33053 1wy1A 172 2.41e+01 1weuA 91 2.44e+01 g.50.1.2 114565 2j8qA 227 2.70e+01 1kqqA 139 2.78e+01 a.4.3.1 72885 2hnlA 225 2.81e+01 2be1A 339 2.81e+01 2dm9A 198 2.88e+01 1aym1 285 2.89e+01 1aym1 2p8jA 209 2.92e+01 1du6A 64 3.05e+01 1akhA a.4.1.1 16002 2f22A 144 3.08e+01 a.213.1.2 132795 1kb9I 55 3.09e+01 f.23.14.1 77324 2azqA 311 3.17e+01 1gq6A 313 3.40e+01 c.42.1.1 70341 2joqA 91 3.42e+01 1dmhA 311 3.45e+01 1dmhA b.3.6.1 22633 2c2aA 258 3.62e+01 a.30.2.1,d.122.1.3 129662,129663 1ufzA 83 3.70e+01 a.5.9.1 107821 3bhoA 208 3.73e+01 1l6pA 125 3.87e+01 b.1.17.1 73626 2o35A 105 3.98e+01 1ggwA 140 4.24e+01 1ggwA a.39.1.5 60490 2fz0A 149 4.45e+01 2bykA 140 4.63e+01 a.22.1.3 129486 1fu1A 203 4.77e+01 1fu1B b.59.1.1,h.1.11.1 27076,45630 2dc3A 193 4.82e+01 1yhpA 212 4.82e+01 1b74A 254 4.82e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 2iorA 235 4.89e+01 2gmqA 118 4.95e+01 1yf2A 425 5.18e+01 d.287.1.2,d.287.1.2 123042,123043 1ml8A 134 5.19e+01 d.227.1.2 85013 1paqA 189 5.19e+01 a.118.1.14 94413 2ozbB 260 5.27e+01 2ofyA 86 5.28e+01 2bc4B 211 5.45e+01 2jnsA 90 5.45e+01 1rp3B 88 5.54e+01 a.137.11.1 97681 1pazA 123 5.55e+01 b.6.1.1 22878 2yy3A 91 5.56e+01 1mtyD 512 5.57e+01 1mhyD a.25.1.2 16742 1j7jA 178 5.68e+01 c.61.1.1 84131 2f6rA 281 5.72e+01 2da7A 71 5.76e+01 2yugA 155 5.77e+01 1qb2A 109 5.81e+01 1qb2A a.36.1.1 17125 2sttA 96 5.88e+01 1awcA a.4.5.21 16163 1qwiA 143 6.18e+01 d.227.1.1 96474 2eqaA 352 6.19e+01 1kkeA 210 6.22e+01 b.83.1.2,b.21.1.2 68669,68670 1b4cA 92 6.28e+01 1b4cA a.39.1.2 17169 1odhA 174 6.29e+01 d.239.1.1 86850 2h8nA 112 6.34e+01 2nqwA 93 6.44e+01 1br1B 150 6.50e+01 1wdcC a.39.1.5 17309 2ysrA 105 6.50e+01 1v5nA 89 6.53e+01 g.49.1.3 108380 1ifc 132 6.61e+01 1ifcA 132 6.61e+01 b.60.1.2 27173 1eysH 259 6.62e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1urvA 190 6.65e+01 a.1.1.2 113414 1r1a1 287 6.73e+01 1aym1 1w6nA 134 6.79e+01 b.29.1.3 114275 1wflA 74 6.79e+01 g.80.1.1 114586 2jmhA 119 6.86e+01 1ibcB 88 7.02e+01 1pauB 2bcjB 340 7.04e+01 b.69.4.1 128289 1v86A 95 7.06e+01 d.15.1.1 108421 1vh6A 145 7.16e+01 a.24.19.1 100644 1zckA 154 7.19e+01 1a0rB 340 7.21e+01 1tbgA b.69.4.1 27658 1yueA 427 7.24e+01 2rldA 121 7.33e+01 2pk8A 103 7.42e+01 d.274.1.1 139707 1k99A 99 7.49e+01 a.21.1.1 68341 1opc 110 7.58e+01 1opc 1opcA 110 7.58e+01 a.4.6.1 16231 1hddC 61 7.58e+01 2hddA a.4.1.1 15978 1je3A 97 7.61e+01 d.68.3.3 71637 1fliA 98 7.63e+01 1awcA a.4.5.21 16160 2iv2X 715 7.67e+01 b.52.2.2,c.81.1.1 137714,137715 1j7iA 264 7.69e+01 1j7iA d.144.1.6 62694 2nvmA 126 7.69e+01 d.326.1.1 138631 1nr3A 122 7.77e+01 d.236.1.1 86092 1vb0A 61 7.79e+01 g.7.1.1 113601 1c20A 128 7.83e+01 1c20A a.4.3.1 16079 2h8gA 267 7.85e+01 2ac3A 316 7.89e+01