Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2g2uB/T0399-2g2uB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g2uB/T0399-2g2uB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2979e-128.12e-55 d.98.1.1
1xxmC/T0399-1xxmC-t04-global-adpstyle1.a2m 1xxmC/T0399-1xxmC-t04-global-adpstyle1.al 6.6748e-047.33e-23
2h36X/T0399-2h36X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2h36X/T0399-2h36X-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0895e-011.10e-13
2pxgA/T0399-2pxgA-t04-global-adpstyle1.a2m 2pxgA/T0399-2pxgA-t04-global-adpstyle1.al 9.0920e-016.39e-06
1h6vA/T0399-1h6vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6vA/T0399-1h6vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0880e+001.28e-06 3grs c.3.1.5
c.3.1.5
d.87.1.1
2gfaA/T0399-2gfaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfaA/T0399-2gfaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3363e+001.78e-15 b.34.9.1
b.34.9.1
2qqrA/T0399-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qqrA/T0399-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7110e+005.33e-14
1wdvA/T0399-1wdvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdvA/T0399-1wdvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1412e+003.85e-12 d.116.1.1
2r78A/T0399-2r78A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2r78A/T0399-2r78A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6629e+004.46e-09
2yvyA/T0399-2yvyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yvyA/T0399-2yvyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3018e+003.49e-14

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001