# List of top-scoring protein chains for T0399.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g2uB 165 1.31e-09 d.98.1.1 134541 1s0wC 165 1.81e-09 d.98.1.1 98311 1xxmC 165 2.49e-09 2pxgA 118 4.62e-03 1h6vA 499 2.83e-01 3grs c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 2j3nA 519 1.35e+00 2cfyA 521 1.36e+00 2g29A 417 3.31e+00 1zkqA 517 3.99e+00 2r19A 159 4.53e+00 2iorA 235 4.90e+00 1knwA 425 4.95e+00 b.49.2.3,c.1.6.1 90969,90970 2coiA 386 4.98e+00 2oqkA 117 8.13e+00 1y4uA 559 8.36e+00 2ej1A 519 8.58e+00 2e4tA 519 8.60e+00 2ioqA 624 9.04e+00 2qdeA 397 9.68e+00 1a0pA 290 1.01e+01 a.60.9.1,d.163.1.1 18105,42165 1gq6A 313 1.08e+01 c.42.1.1 70341 1hp1A 516 1.26e+01 d.114.1.1,d.159.1.2 70976,70977 1u59A 287 1.27e+01 d.144.1.7 107681 1hpuA 525 1.30e+01 d.114.1.1,d.159.1.2 70979,70980 1imjA 210 1.36e+01 c.69.1.23 71246 2obdA 476 1.36e+01 1ushA 550 1.41e+01 d.114.1.1,d.159.1.2 40923,42079 1oidA 532 1.41e+01 d.114.1.1,d.159.1.2 103952,103953 1j7jA 178 1.56e+01 c.61.1.1 84131 1bf2A 750 1.85e+01 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1pbyB 337 1.93e+01 b.69.2.2 94422 1jizA 166 2.05e+01 d.92.1.11 71693 2ozoA 613 2.05e+01 2pojA 164 2.08e+01 2z2dA 164 2.08e+01 1mzbA 136 2.28e+01 a.4.5.42 91497 1l8tA 263 2.35e+01 d.144.1.6 73702 1j7lA 264 2.35e+01 d.144.1.6 62697 1oi8A 532 2.36e+01 d.114.1.1,d.159.1.2 103942,103943 1oy5A 257 2.37e+01 c.116.1.4 93718 2c0dA 221 2.53e+01 1jk3A 158 2.55e+01 d.92.1.11 66790 1uttA 159 2.58e+01 d.92.1.11 113430 1rosA 163 2.63e+01 d.92.1.11 111903 2o0mA 345 2.66e+01 2bkkA 264 2.72e+01 2p6lA 265 2.83e+01 2yvyA 278 3.16e+01 1w9eA 166 3.44e+01 b.36.1.1,b.36.1.1 120779,120780 1b72B 87 3.49e+01 1akhA a.4.1.1 16001 2o7sA 523 3.50e+01 1gkgA 136 3.52e+01 g.18.1.1,g.18.1.1 70219,70220 1x2lA 101 3.56e+01 a.35.1.7 121644 1d7qA 143 3.58e+01 1d7qA b.40.4.5 25331 1wvwA 278 3.65e+01 2p3eA 420 3.66e+01 1os9A 165 3.68e+01 d.92.1.11 93482 1y93A 159 3.70e+01 d.92.1.11 122772 2e9jA 119 3.70e+01 2hgwA 365 3.73e+01 2v6oA 596 3.76e+01 1p4fA 293 3.80e+01 d.144.1.7 104063 1jksA 294 3.81e+01 d.144.1.7 71710 2pb5A 265 3.93e+01 1hbzA 498 4.14e+01 1cf9A e.5.1.1 60937 1gweA 503 4.17e+01 e.5.1.1 70667 2aar7 113 4.19e+01 1vknA 351 4.22e+01 c.2.1.3,d.81.1.1 108676,108677 2pgsA 451 4.46e+01 2cr0A 121 4.52e+01 2a6hC 1119 4.70e+01 e.29.1.1 126264 2emuA 265 4.72e+01 2q7zA 1931 4.90e+01 1pufB 73 4.95e+01 a.4.1.1 95132 2madH 373 5.09e+01 2bbkH b.69.2.1 27639 2eb0A 307 5.17e+01 2pb6A 265 5.19e+01 1ouwA 152 5.33e+01 b.77.3.1 93571 2g75B 213 5.35e+01 2pciA 265 5.38e+01 2a1hA 365 5.50e+01 e.17.1.1 125997 2hhfA 365 5.54e+01 e.17.1.1 136474 2pchA 265 5.57e+01 2e07A 265 5.59e+01 1c0aA 585 5.61e+01 1c0aA b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1il2A 590 5.62e+01 b.40.4.1,d.74.4.1,d.104.1.1 66193,66194,66195 2d3o1 112 5.62e+01 3stdA 165 5.70e+01 3stdA d.17.4.1 38073 2h36X 112 5.83e+01 1uulA 202 5.89e+01 c.47.1.10 113433 6stdA 164 5.89e+01 3stdA d.17.4.1 38076 2emrA 265 5.90e+01 2qoiA 373 5.92e+01 2qodA 373 5.96e+01 2qo9A 373 5.98e+01 2qofA 373 5.98e+01 1vdhA 249 5.99e+01 d.58.4.10 108523 2qooA 373 6.01e+01 1e3uD 246 6.10e+01 1fofA e.3.1.1 42758 2stdA 172 6.26e+01 d.17.4.1 38085 2iy1B 83 6.27e+01 d.15.1.1 137788 2qocA 344 6.28e+01 2el3A 265 6.31e+01 2iy0B 82 6.35e+01 d.15.1.1 137787 2bf8B 77 6.36e+01 d.15.1.1 128412 1hruA 188 6.40e+01 1hruA d.115.1.1 40926 2qokA 373 6.41e+01 2eh2A 265 6.42e+01 2eniA 265 6.46e+01 2g4dB 78 6.47e+01 d.15.1.1 134590 1idpA 172 6.48e+01 d.17.4.1 83685 2huvA 265 6.51e+01 2uyzB 79 6.57e+01 d.15.1.1 140039 2ekaA 265 6.59e+01 1w72L 210 6.59e+01 b.1.1.1,b.1.1.2 114303,114304 2egbA 265 6.65e+01 2pb4A 265 6.65e+01 2e8rA 265 6.66e+01 2p5fA 265 6.67e+01 1yrpA 278 6.70e+01 2qolA 373 6.72e+01 1io8A 368 6.76e+01 1f4tA a.104.1.1 62618 2eh4A 265 6.76e+01 2hutA 265 6.76e+01 2e8sA 265 6.77e+01 1tgzB 80 6.78e+01 d.15.1.1 106902 2e08A 265 6.78e+01 3bhyA 283 6.79e+01 2el2A 265 6.80e+01 2eeqA 265 6.80e+01 2el0A 265 6.81e+01 2eh5A 265 6.83e+01 2dv7A 265 6.84e+01 2dxxA 265 6.84e+01 2e8hA 265 6.85e+01 1u1iA 392 6.87e+01 c.2.1.3,d.81.1.3 107582,107583 2eldA 265 6.88e+01 2owkA 265 6.94e+01 2owgA 265 6.95e+01 2e4rA 265 6.97e+01 2e17A 265 6.97e+01 2en5A 265 6.97e+01 2p6iA 265 6.97e+01 2dshA 265 6.97e+01 2ek3A 265 6.99e+01 2io2B 82 7.00e+01 d.15.1.1 137540 2ejjA 265 7.02e+01 2ed5A 265 7.02e+01 2e16A 265 7.02e+01 2dekA 265 7.02e+01 c.90.1.1 131430 2o3oA 254 7.05e+01 2dsiA 265 7.06e+01 2owvA 265 7.08e+01 2e15A 265 7.08e+01 2owuA 265 7.10e+01 2j90A 304 7.10e+01 2egsA 265 7.10e+01 2e4nA 265 7.14e+01 2ehlA 265 7.14e+01 2eglA 265 7.17e+01 2owfA 265 7.17e+01 2ed3A 265 7.18e+01 2ek7A 265 7.18e+01 1aipA 405 7.22e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2p2xA 265 7.23e+01 2pckA 265 7.24e+01 2ehcA 265 7.25e+01 1lfuP 82 7.36e+01 a.4.1.1 77939 2eleA 265 7.38e+01 1fw3A 275 7.38e+01 1qd5A f.4.2.1 60054 2gbwA 454 7.39e+01 2dv3A 265 7.45e+01 1jofA 365 7.48e+01 b.69.10.1 71775 1h8zA 247 7.52e+01 1fofA e.3.1.1 60803 2ek2A 265 7.59e+01 2qonA 373 7.60e+01 2p6kA 265 7.79e+01 2qo7A 373 7.82e+01