# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g2uB 165 5.13e-14 d.98.1.1 134541 1jtgB 165 5.86e-14 d.98.1.1 67267 2h36X 112 9.56e-01 1j7jA 178 1.07e+00 c.61.1.1 84131 2ns2A 242 1.47e+00 1vdhA 249 3.00e+00 d.58.4.10 108523 1h6vA 499 3.38e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1mvwC 147 4.12e+00 i.15.1.1 79525 2nvmA 126 4.94e+00 d.326.1.1 138631 1pufB 73 5.17e+00 a.4.1.1 95132 2gu3A 136 5.40e+00 2ch0A 133 5.92e+00 2vjvA 159 6.80e+00 2r2iA 198 8.08e+00 2r78A 117 8.09e+00 1t0tV 248 9.52e+00 d.58.4.10 106229 1gqvA 135 9.99e+00 d.5.1.1 70376 1d7qA 143 1.04e+01 1d7qA b.40.4.5 25331 1w7jB 151 1.06e+01 a.39.1.5 120690 2bkkA 264 1.16e+01 1v5sA 126 1.19e+01 d.129.6.1 108384 1b72B 87 1.22e+01 1akhA a.4.1.1 16001 2e50A 225 1.22e+01 2a6mA 155 1.25e+01 d.58.57.1 126287 1t9iA 163 1.27e+01 d.95.2.1 112360 2qdlA 165 1.27e+01 1g9zA 152 1.29e+01 1bp7A d.95.2.1 60408 2fikA 287 1.44e+01 b.1.1.2,d.19.1.1 133524,133525 2dumA 170 1.47e+01 1ucrA 78 1.52e+01 a.4.5.45 99188 1h2iA 209 1.56e+01 d.50.1.3 76550 2eqaA 352 1.62e+01 2inpE 118 1.67e+01 1kv9A 668 1.68e+01 a.3.1.6,b.70.1.1 73056,73057 2g2bA 150 1.76e+01 1b8iB 63 1.84e+01 1akhA a.4.1.1 16011 2j58A 359 1.89e+01 1knwA 425 1.90e+01 b.49.2.3,c.1.6.1 90969,90970 1zkiA 133 1.99e+01 d.38.1.5 125199 2z2mA 168 2.18e+01 2yxyA 115 2.27e+01 2e2dC 180 2.38e+01 b.40.3.1 131980 1gq6A 313 2.44e+01 c.42.1.1 70341 1vlaA 150 2.46e+01 d.227.1.2 108735 1oqcA 125 2.50e+01 a.24.15.1 87264 2q1zB 195 2.56e+01 2zc3A 168 2.64e+01 2c0dA 221 2.68e+01 1zd9A 188 2.74e+01 c.37.1.8 124938 2a6hC 1119 2.74e+01 e.29.1.1 126264 1vz0A 230 2.77e+01 a.4.14.1,d.268.1.1 108929,108930 2iskA 230 2.84e+01 1c3pA 375 2.91e+01 1c3pA c.42.1.2 32606 1br1B 150 2.93e+01 1wdcC a.39.1.5 17309 1u5xA 140 3.00e+01 b.22.1.1 113055 2pfsA 150 3.00e+01 2jrnA 163 3.08e+01 1poiA 317 3.09e+01 1poiA c.124.1.2 34153 2pebA 122 3.19e+01 1sfp 114 3.24e+01 1sfp 1sfpA 114 3.24e+01 b.23.1.1 23895 2e9qA 459 3.33e+01 2oziA 98 3.33e+01 1r9jA 673 3.39e+01 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1io7A 368 3.60e+01 1f4tA a.104.1.1 18971 1ab8A 220 3.72e+01 1azsA d.58.29.1 39414 1xk7A 408 3.73e+01 c.123.1.1 122071 2f22A 144 3.74e+01 a.213.1.2 132795 1sfeA 180 3.75e+01 a.4.2.1,c.55.7.1 16073,33748 2o2cA 613 3.81e+01 3cjdA 198 3.89e+01 2qzbA 166 4.09e+01 1jhdA 396 4.12e+01 b.122.1.3,c.26.1.5 66712,66713 1w6nA 134 4.16e+01 b.29.1.3 114275 1nogA 177 4.17e+01 a.25.2.2 85923 2f6rA 281 4.21e+01 1wdvA 152 4.22e+01 d.116.1.1 114539 1vqoA 240 4.31e+01 b.34.5.3,b.40.4.5 120361,120362 2pu3A 211 4.41e+01 2qdeA 397 4.44e+01 2yvyA 278 4.48e+01 2akrA 285 4.65e+01 b.1.1.2,d.19.1.1 126931,126932 1svdM 110 4.65e+01 d.73.1.1 119059 2dnjA 260 4.70e+01 3dni d.151.1.1 41790 1s6lA 212 4.73e+01 2fhqA 141 4.73e+01 b.45.1.1 133497 1dmuA 299 5.02e+01 1dmuA c.52.1.4 33294 1nf3C 128 5.16e+01 b.36.1.1 85596 1wvfA 520 5.22e+01 d.58.32.1,d.145.1.1 121337,121338 1xx6A 191 5.27e+01 c.37.1.24,g.39.1.14 116139,116140 1jsdB 176 5.36e+01 h.3.1.1 63259 2d58A 107 5.45e+01 2hdvA 111 5.47e+01 1jk3A 158 5.54e+01 d.92.1.11 66790 1xa3A 437 5.56e+01 c.123.1.1 115025 1vfjA 116 5.57e+01 d.58.5.1 113637 2q7nA 488 5.65e+01 2yz1A 120 5.67e+01 2a40B 260 5.99e+01 d.151.1.1 126139 1azsB 212 6.01e+01 1azsA d.58.29.1 39423 1i58A 189 6.01e+01 1b3qA d.122.1.3 61773 1ry9A 145 6.06e+01 d.198.1.1 98094 2agmA 167 6.08e+01 2jnsA 90 6.10e+01 2gzqA 200 6.14e+01 1b8aA 438 6.21e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2i10A 202 6.29e+01 a.4.1.9,a.121.1.1 136960,136961 1e2tA 284 6.31e+01 1e2tA d.3.1.5 37121 1wh8A 111 6.35e+01 a.35.1.7 114636 1mx0A 472 6.38e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 2fsrA 195 6.39e+01 d.108.1.1 134036 2hh8A 149 6.45e+01 1imjA 210 6.51e+01 c.69.1.23 71246 1l3aA 228 6.52e+01 d.18.1.2 73531 1wy1A 172 6.62e+01 2cjjA 93 6.90e+01 a.4.1.3 130540 1a0p 290 6.95e+01 1a0p 1a0pA 290 6.95e+01 a.60.9.1,d.163.1.1 18105,42165 1v30A 124 7.04e+01 d.269.1.1 113496 2qe6A 274 7.11e+01 1i19A 561 7.22e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 2j5aA 110 7.23e+01 1vr6A 350 7.27e+01 c.1.10.4 120439 1ngr 85 7.27e+01 1ngr 1ngrA 85 7.27e+01 a.77.1.2 18422 2hwjA 205 7.37e+01 1ezwA 349 7.37e+01 1ezwA c.1.16.3 29558 2dk5A 91 7.69e+01 2joyA 96 7.73e+01 2golA 133 7.93e+01 a.61.1.1 135438