# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hkqA 126 7.451e-01 a.4.5.10 83555 1jtgB 166 7.624e-01 d.98.1.1 67267 2g2uB 166 7.624e-01 d.98.1.1 134541 1clqA 904 3.484e+00 1clqA c.55.3.5 33717 e.8.1.1 43006 1oa8A 129 4.178e+00 b.145.1.1 92698 1ih7A 898 5.300e+00 1clqA c.55.3.5 62375 e.8.1.1 62376 1xqsA 265 6.352e+00 a.118.1.21 122243 1pkp 146 6.989e+00 1pkp 1ylmA 144 8.356e+00 2rddB 38 8.964e+00 1fjgE 151 9.690e+00 1pkp d.14.1.1 37553 d.50.1.2 38789 1y43A 33 1.204e+01 b.29.1.20 122607 1attA 421 1.610e+01 1ovaA e.1.1.1 42638 2vdfA 226 1.633e+01 2nr1A 24 1.729e+01 j.35.1.1 46270 1q8iA 709 1.921e+01 c.55.3.5 96208 e.8.1.1 96209 2gsvA 68 1.939e+01 1ccwB 484 2.000e+01 1cb7B c.1.19.2 29646 1xqrA 269 2.111e+01 a.118.1.21 122241 1qqcA 741 2.348e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 2xatA 209 2.383e+01 b.81.1.3 28058 2a40B 261 2.595e+01 d.151.1.1 126139 1dxsA 58 2.795e+01 1cokA a.60.1.2 17944 2xat 209 3.013e+01 2xat 1noyA 373 3.202e+01 1clqA c.55.3.5 33713 1vdnA 162 3.275e+01 b.62.1.1 120006 1ytrA 27 3.462e+01 1t08A 511 3.582e+01 a.118.1.1 112190 3bk2A 550 3.740e+01 1m5yA 389 3.748e+01 a.223.1.2 78664 d.26.1.1 78665 d.26.1.1 78666 2dhxA 105 3.787e+01 1ontA 22 3.815e+01 j.31.1.2 46232 2qnkA 287 3.921e+01