PFRMAT SS
TARGET T0399
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0399.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 29
METHOD
MODEL 1
M C 0.804
S C 0.653
M C 0.382
K T 0.379
K T 0.310
T H 0.410
K H 0.780
N H 0.892
W H 0.972
L H 0.988
L H 0.995
V H 0.997
F H 0.997
L H 0.997
T H 0.996
V H 0.995
T H 0.993
F H 0.993
C H 0.989
F H 0.983
L H 0.968
M H 0.930
L H 0.795
G H 0.450
C T 0.357
Q T 0.534
S T 0.638
K T 0.634
E T 0.531
D T 0.452
K T 0.421
K T 0.398
G T 0.379
G T 0.360
T T 0.324
K C 0.320
P C 0.337
S H 0.345
N H 0.339
E H 0.403
A H 0.466
A H 0.472
L H 0.410
T H 0.454
K H 0.492
T H 0.618
E H 0.646
N H 0.692
L H 0.729
D H 0.684
F H 0.655
R H 0.465
L H 0.413
S T 0.337
F T 0.344
N T 0.333
K C 0.294
I E 0.449
K E 0.567
V E 0.452
T E 0.424
T E 0.470
D E 0.456
Q E 0.381
N E 0.288
H E 0.371
F E 0.448
S T 0.405
G T 0.595
G T 0.633
T C 0.381
S C 0.866
I H 0.950
E H 0.962
Q H 0.975
L H 0.985
K H 0.984
Q H 0.966
W H 0.946
F H 0.806
G C 0.729
D C 0.582
P T 0.411
N T 0.502
K T 0.538
S T 0.491
E T 0.422
Q T 0.340
R E 0.332
N E 0.411
A T 0.441
G T 0.638
N T 0.520
I E 0.681
T E 0.889
L E 0.958
D E 0.949
S E 0.972
Y E 0.981
T E 0.977
W E 0.967
V E 0.874
K T 0.557
D T 0.877
G T 0.795
A E 0.672
V E 0.935
I E 0.984
N E 0.993
A E 0.991
Q E 0.981
L E 0.919
Y E 0.532
K T 0.883
N T 0.883
S E 0.683
T E 0.958
V E 0.964
A E 0.962
R E 0.899
S E 0.776
I E 0.574
S T 0.329
N C 0.443
F C 0.405
S E 0.400
F T 0.365
S T 0.625
R T 0.589
E T 0.616
A T 0.535
K C 0.507
I C 0.574
G C 0.750
K H 0.831
E H 0.851
D H 0.915
Y H 0.956
D H 0.963
E H 0.943
L H 0.914
K H 0.799
I H 0.555
G C 0.578
E C 0.668
S C 0.923
Y H 0.946
K H 0.976
K H 0.991
V H 0.994
V H 0.993
E H 0.989
K H 0.975
L H 0.854
G C 0.689
E C 0.657
P C 0.426
D T 0.383
V T 0.372
L T 0.324
S T 0.264
Q E 0.334
S E 0.292
M E 0.343
S T 0.416
S T 0.556
D T 0.586
K T 0.485
E E 0.467
E E 0.775
M E 0.911
Q E 0.938
T E 0.967
V E 0.967
W E 0.943
S E 0.896
S E 0.732
G E 0.678
I E 0.792
K E 0.754
T E 0.422
K T 0.687
S T 0.792
S T 0.720
S T 0.512
A E 0.559
T E 0.771
I E 0.938
E E 0.973
L E 0.987
Y E 0.986
F E 0.970
E E 0.786
N T 0.856
G T 0.808
L E 0.698
L E 0.912
K E 0.924
N E 0.930
K E 0.745
T E 0.480
Q T 0.401
K T 0.464
D T 0.409
L C 0.672
E C 0.948
END