PFRMAT SS
TARGET T0399
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0399.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 29
METHOD
MODEL 1
M C 0.998
S C 0.642
M C 0.356
K H 0.497
K H 0.565
T H 0.694
K H 0.831
N H 0.935
W H 0.974
L H 0.988
L H 0.991
V H 0.996
F H 0.997
L H 0.997
T H 0.996
V H 0.996
T H 0.996
F H 0.995
C H 0.990
F H 0.979
L H 0.953
M H 0.898
L H 0.803
G H 0.561
C H 0.281
Q C 0.289
S C 0.318
K T 0.323
E T 0.301
D C 0.354
K C 0.407
K C 0.345
G T 0.273
G C 0.324
T C 0.340
K H 0.319
P H 0.356
S H 0.408
N H 0.468
E H 0.532
A H 0.574
A H 0.567
L H 0.565
T H 0.492
K H 0.521
T H 0.640
E H 0.676
N H 0.629
L H 0.762
D H 0.718
F H 0.648
R H 0.496
L H 0.365
S T 0.274
F C 0.317
N C 0.296
K E 0.262
I E 0.429
K E 0.505
V E 0.452
T E 0.357
T E 0.388
D E 0.448
Q E 0.410
N E 0.365
H E 0.372
F E 0.351
S C 0.323
G T 0.275
G C 0.428
T C 0.446
S C 0.554
I H 0.933
E H 0.919
Q H 0.919
L H 0.966
K H 0.931
Q H 0.889
W H 0.834
F H 0.387
G C 0.454
D C 0.572
P C 0.443
N C 0.350
K C 0.313
S C 0.306
E C 0.289
Q C 0.382
R E 0.603
N E 0.603
A E 0.428
G T 0.694
N T 0.475
I E 0.815
T E 0.952
L E 0.962
D E 0.962
S E 0.933
Y E 0.964
T E 0.974
W E 0.954
V E 0.805
K E 0.369
D T 0.428
G S 0.397
A E 0.477
V E 0.896
I E 0.966
N E 0.987
A E 0.978
Q E 0.981
L E 0.923
Y E 0.722
K T 0.678
N T 0.690
S C 0.430
T E 0.754
V E 0.852
A E 0.802
R E 0.569
S E 0.454
I H 0.304
S T 0.467
N T 0.522
F C 0.682
S C 0.541
F C 0.388
S C 0.321
R T 0.299
E C 0.287
A S 0.429
K C 0.461
I C 0.585
G C 0.875
K H 0.861
E H 0.855
D H 0.862
Y H 0.946
D H 0.895
E H 0.827
L H 0.822
K H 0.742
I T 0.568
G T 0.697
E C 0.633
S C 0.702
Y H 0.957
K H 0.946
K H 0.947
V H 0.976
V H 0.961
E H 0.941
K H 0.900
L H 0.548
G C 0.429
E C 0.560
P C 0.505
D C 0.323
V C 0.277
L C 0.331
S E 0.348
Q E 0.458
S E 0.485
M E 0.484
S E 0.326
S T 0.570
D T 0.659
K C 0.421
E E 0.522
E E 0.719
M E 0.853
Q E 0.930
T E 0.965
V E 0.958
W E 0.950
S E 0.879
S E 0.690
G E 0.538
I E 0.559
K E 0.468
T E 0.302
K T 0.353
S S 0.310
S T 0.301
S C 0.351
A C 0.341
T E 0.611
I E 0.860
E E 0.970
L E 0.981
Y E 0.987
F E 0.946
E E 0.849
N T 0.810
G T 0.804
L E 0.606
L E 0.893
K E 0.889
N E 0.781
K E 0.413
T C 0.298
Q C 0.382
K T 0.332
D T 0.407
L C 0.937
E C 0.998
END