# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2g2uB 165 2.75e-08 d.98.1.1 134541 1jtgB 165 2.79e-08 d.98.1.1 67267 2h36X 112 3.61e-02 1wdvA 152 2.50e-01 d.116.1.1 114539 2c2aA 258 1.13e+00 a.30.2.1 129662 d.122.1.3 129663 2pbiB 354 1.36e+00 2oajA 902 1.50e+00 2cw9A 194 1.69e+00 d.17.4.13 130920 1ucrA 78 1.70e+00 a.4.5.45 99188 2j3mA 572 3.01e+00 1b1gA 75 3.53e+00 1psrA a.39.1.1 17151 1zh5A 195 3.86e+00 a.4.5.46 125073 d.58.7.1 125074 2glcA 342 5.25e+00 2afbA 351 5.31e+00 c.72.1.1 126674 2i0oA 304 5.34e+00 2c9wA 169 6.01e+00 2z0xA 158 6.90e+00 1a99A 344 6.94e+00 1pot c.94.1.1 35812 2p36A 335 7.09e+00 1pn2A 280 8.40e+00 d.38.1.4 94930 d.38.1.4 94931 1j3wA 163 8.51e+00 d.110.7.1 90833 1tib 269 9.31e+00 3tgl 1tibA 269 9.31e+00 c.69.1.17 34738 2yvdA 431 9.48e+00 2reiA 318 9.89e+00 2grvA 621 9.90e+00 1zckA 154 1.11e+01 2i3oA 516 1.15e+01 d.153.1.6 137027 1d7pM 159 1.17e+01 1cztA b.18.1.2 23718 2dkfA 431 1.18e+01 2b0vA 153 1.19e+01 d.113.1.1 127650 1rxdA 159 1.20e+01 c.45.1.1 111959 1ecfB 504 1.24e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1ys1X 320 1.29e+01 2cx5A 158 1.30e+01 2fziA 206 1.31e+01 c.71.1.1 134448 1ughI 82 1.37e+01 1ugiA d.17.5.1 38133 1efpB 252 1.38e+01 1efvB c.26.2.3 31636 1r4aA 165 1.42e+01 c.37.1.8 96986 2isbA 192 1.43e+01 c.8.9.1 137601 2g17A 337 1.48e+01 c.2.1.3 134512 d.81.1.1 134513 2hpvA 208 1.50e+01 2j8qA 227 1.51e+01 2gu3A 136 1.53e+01 1vjnA 220 1.65e+01 d.157.1.4 100825 1ecfA 504 1.68e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1cc1L 498 1.76e+01 1h2rL e.18.1.1 43301 1h6vA 499 1.76e+01 3grs c.3.1.5 60693 c.3.1.5 60694 d.87.1.1 60695 1zghA 260 1.78e+01 b.46.1.1 125028 c.65.1.1 125029 1r6jA 82 1.79e+01 b.36.1.1 97151 1phkA 298 1.83e+01 d.144.1.7 41635 1konA 249 1.86e+01 e.39.1.1 72823 1aoeA 192 1.87e+01 1aoeA c.71.1.1 34923 1gq6A 313 1.90e+01 c.42.1.1 70341 1zclA 180 1.95e+01 1vz0A 230 1.95e+01 a.4.14.1 108929 d.268.1.1 108930 2c60A 111 2.03e+01 d.15.2.2 129966 3bw8A 217 2.04e+01 1ta8A 332 2.05e+01 d.142.2.2 112375 1zkiA 133 2.08e+01 d.38.1.5 125199 2dj5A 133 2.12e+01 c.92.1.3 131536 2bcjB 340 2.13e+01 b.69.4.1 128289 1j7jA 178 2.18e+01 c.61.1.1 84131 1jofA 365 2.18e+01 b.69.10.1 71775 1br1B 150 2.19e+01 1wdcC a.39.1.5 17309 2gx9A 129 2.26e+01 d.299.1.1 135828 1nox 205 2.30e+01 1nox 1noxA 205 2.30e+01 d.90.1.1 40242 1eq3A 96 2.31e+01 1eq3A d.26.1.1 59486 1jl0A 334 2.33e+01 1jenA d.156.1.1 63155 1o7fA 469 2.34e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1v5rA 97 2.35e+01 d.82.4.1 119854 2ip2A 334 2.37e+01 2id0A 644 2.38e+01 2gjsA 176 2.40e+01 c.37.1.8 135287 1sv6A 269 2.44e+01 d.177.1.1 106043 2odiA 238 2.70e+01 2oseA 234 2.74e+01 1tg7A 971 2.74e+01 b.149.1.1 112418 b.18.1.27 112419 b.18.1.27 112420 b.71.1.5 112421 c.1.8.14 112422 1hlcA 129 2.79e+01 1c1lA b.29.1.3 24208 1ut1A 148 2.80e+01 b.2.3.6 108014 2h8gA 267 2.80e+01 1plq 258 2.84e+01 1plq 1plqA 258 2.84e+01 d.131.1.2 41388 d.131.1.2 41389 1gotB 340 2.86e+01 1tbgA b.69.4.1 27648 1vr6A 350 2.91e+01 c.1.10.4 120439 1x24A 180 2.91e+01 2amyA 246 2.93e+01 c.108.1.10 127026 3bhoA 208 2.94e+01 1qnaA 200 2.95e+01 1ytbA d.129.1.1 41226 d.129.1.1 41227 2a6hC 1119 2.98e+01 e.29.1.1 126264 2g6yA 217 3.04e+01 2bc4B 211 3.07e+01 1h65A 270 3.08e+01 c.37.1.8 65640 2bjfA 329 3.08e+01 2qg7A 458 3.09e+01 2awpA 198 3.18e+01 2dekA 265 3.19e+01 c.90.1.1 131430 2joyA 96 3.27e+01 2e1bA 216 3.28e+01 1foeA 377 3.36e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1hdmB 193 3.40e+01 1hdmB b.1.1.2 21584 d.19.1.1 38158 1a49A 530 3.46e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 2j69A 695 3.46e+01 2hb0A 369 3.48e+01 2a2cA 478 3.51e+01 2o35A 105 3.57e+01 1mvwC 147 3.60e+01 i.15.1.1 79525 2ix0A 663 3.70e+01 1d3uA 181 3.73e+01 1ytbA d.129.1.1 41290 d.129.1.1 41291 2g50A 530 3.74e+01 b.58.1.1 134618 c.1.12.1 134619 c.49.1.1 134620 2oizD 135 3.81e+01 2agyD 135 3.81e+01 2bk8A 97 3.83e+01 2fueA 262 3.87e+01 c.108.1.10 134119 2be1A 339 3.99e+01