Best Alignments for T0399

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2g2uB	3.6393e-07	2g2uB/T0399-2g2uB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
1jtgB	3.9748e-07	1jtgB/T0399-1jtgB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.98.1.1
2o8xA	6.4840e+00	2o8xA/T0399-2o8xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h27A	1.5283e+01	2h27A/T0399-2h27A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.13.2
1r69	2.4478e+01	1r69/T0399-1r69-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mt6A	3.5179e+01	1mt6A/T0399-1mt6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2h36X	3.7994e+01	2h36X/T0399-2h36X-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1igtB	3.9784e+01	1igtB/T0399-1igtB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wgvA	4.1178e+01	1wgvA/T0399-1wgvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.15.1.4
1j9bA	4.2715e+01	1j9bA/T0399-1j9bA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1or7A	4.4379e+01	1or7A/T0399-1or7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.13.2 a.177.1.1
1adrA	4.4674e+01	1adrA/T0399-1adrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.2
1mzuA	4.5508e+01	1mzuA/T0399-1mzuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vfrA	4.5569e+01	1vfrA/T0399-1vfrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.90.1.1
2ef8A	4.8859e+01	2ef8A/T0399-2ef8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1utxA	5.0203e+01	1utxA/T0399-1utxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.35.1.3
1igtD	5.1099e+01	1igtD/T0399-1igtD-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f1wA	5.1210e+01	2f1wA/T0399-2f1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1nwzA	5.3283e+01	1nwzA/T0399-1nwzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3pyp	5.3283e+01	3pyp/T0399-3pyp-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001