# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.59e-05	d.98.1.1	67267
2g2uB	165	1.75e-05	d.98.1.1	134541
2o8xA	70	2.558		
1r69	69	8.297		
2h27A	73	8.999	a.4.13.2	135993
1mt6A	280	12.52	b.76.2.1,b.85.7.1	79446,79447
1or7A	194	12.71	a.4.13.2,a.177.1.1	87332,87333
1adrA	76	13.06	a.35.1.2	17042
1utxA	66	17.74	a.35.1.3	108034
2cxyA	125	18.83		
2d5vA	164	20.91		
2b5aA	77	21.41	a.35.1.3	127882
1vkiA	181	23.29	d.116.1.1	108664
2ef8A	84	24.13		
1y7yA	74	24.15	a.35.1.3	122729
3bemA	218	27.29		
2nrrA	159	32.24		
2bnmA	198	32.73	a.35.1.3,b.82.1.10	128835,128836
1vfrA	218	35.56	d.90.1.1	40247
1fs1B	141	37.21	a.157.1.1,d.42.1.1	19252,38664
1yqgA	263	37.57		
1tygB	87	40.48	d.15.3.2	107455
2i5gA	325	41.91		
2h36X	112	45.29		
1jkoC	52	47.15	a.4.1.2	66809
3b40A	417	47.62		
1r69A	69	48.23	a.35.1.2	17028
1vjfA	180	49.31	d.116.1.1	100809
2odvA	235	51.97		
1hcrA	52	53.47	a.4.1.2	16020
2fa1A	160	53.61	d.190.1.2	133182
2q88A	257	54.00		
1nstA	325	54.62	c.37.1.5	31951
1ic8A	194	55.13	a.4.1.1,a.35.1.1	76740,76741
1lmb3	92	55.68		
2h0uA	217	56.75		
1lj9A	144	57.32	a.4.5.28	78035
2o35A	105	57.65		
1sedA	117	58.04	a.219.1.1	105449
1lliA	92	58.74	a.35.1.2	17025
1fqvD	149	59.76	a.157.1.1,d.42.1.1	19263,38667
1ufmA	84	60.14	a.4.5.47	107816
2f1sA	186	60.92		
2iskA	230	62.53		
2g17A	337	62.76	c.2.1.3,d.81.1.1	134512,134513
2dvwB	83	62.86		
1lnwA	147	64.41	a.4.5.28	78104
3b7hA	78	68.44		
2ppxA	99	68.55		
2g8lA	299	69.54	e.50.1.1	134775
2p2sA	336	78.35		
1noxA	205	78.35	d.90.1.1	40242
2ho3A	325	78.54		
3ceaA	346	78.59		
2gauA	232	83.45	a.4.5.4,b.82.3.2	134894,134895
2glxA	332	85.22		
1ef4A	55	85.23	a.4.11.1	16272
2aqjA	538	85.98		
2hd1A	326	86.62	a.211.1.2	136338