# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	1.51e-05	d.98.1.1	67267
2g2uB	165	1.51e-05	d.98.1.1	134541
2o8xA	70	4.783		
2h27A	73	15.80	a.4.13.2	135993
1r69	69	17.80		
1or7A	194	22.29	a.4.13.2,a.177.1.1	87332,87333
2d5vA	164	23.13		
1mt6A	280	26.34	b.76.2.1,b.85.7.1	79446,79447
3bemA	218	27.12		
2nrrA	159	28.89		
1vfrA	218	29.78	d.90.1.1	40247
1adrA	76	31.26	a.35.1.2	17042
1utxA	66	34.87	a.35.1.3	108034
2ef8A	84	35.67		
1vkiA	181	36.42	d.116.1.1	108664
1tygB	87	36.63	d.15.3.2	107455
1jkoC	52	38.92	a.4.1.2	66809
2cxyA	125	40.09		
3ceaA	346	40.84		
2b5aA	77	42.44	a.35.1.3	127882
1ufmA	84	43.59	a.4.5.47	107816
2glxA	332	43.96		
1yqgA	263	46.55		
2ho3A	325	48.48		
1ic8A	194	49.63	a.4.1.1,a.35.1.1	76740,76741
1fs1B	141	50.45	a.157.1.1,d.42.1.1	19252,38664
1y7yA	74	51.36	a.35.1.3	122729
2h0uA	217	54.16		
1nstA	325	54.33	c.37.1.5	31951
2iskA	230	58.62		
2o4uX	334	58.76		
2a6mA	155	60.87	d.58.57.1	126287
2q88A	257	61.47		
2h36X	112	63.70		
2g8lA	299	65.29	e.50.1.1	134775
2odvA	235	65.50		
2g17A	337	65.54	c.2.1.3,d.81.1.1	134512,134513
1noxA	205	67.25	d.90.1.1	40242
1z2nX	324	70.91		
2hh8A	149	71.03		
1vjfA	180	72.36	d.116.1.1	100809
2dvwB	83	72.46		
2b67A	204	72.70	d.90.1.1	127970
1sedA	117	73.05	a.219.1.1	105449
1nox	205	73.12		
2fp8A	322	73.58		
2bnmA	198	74.58	a.35.1.3,b.82.1.10	128835,128836
2gx9A	129	76.73	d.299.1.1	135828
1hcrA	52	76.98	a.4.1.2	16020
1cp3A	277	79.48	c.17.1.1	30992
1fqvD	149	80.42	a.157.1.1,d.42.1.1	19263,38667
2oggA	152	81.18		
2o35A	105	81.67		
2fa1A	160	81.84	d.190.1.2	133182
2astA	159	85.40		
1vhtA	218	87.19	c.37.1.1	100700
1ef4A	55	88.37	a.4.11.1	16272