# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 3.68e-06 d.98.1.1 134541 1jtgB 165 5.00e-06 d.98.1.1 67267 2o8xA 70 1.284 1cp3A 277 1.427 c.17.1.1 30992 1r69 69 2.738 1adrA 76 4.631 a.35.1.2 17042 2h27A 73 4.782 a.4.13.2 135993 1utxA 66 6.096 a.35.1.3 108034 1or7A 194 6.411 a.4.13.2,a.177.1.1 87332,87333 2ef8A 84 7.001 1jkoC 52 7.988 a.4.1.2 66809 2b5aA 77 8.297 a.35.1.3 127882 1y7yA 74 9.209 a.35.1.3 122729 2bnmA 198 9.603 a.35.1.3,b.82.1.10 128835,128836 3bemA 218 9.98 3ceaA 346 10.59 1qtnA 164 12.38 c.17.1.1 30999 2bf5A 98 13.57 d.137.1.1 128405 1r69A 69 14.68 a.35.1.2 17028 2h36X 112 16.36 2glxA 332 16.44 2g17A 337 16.75 c.2.1.3,d.81.1.1 134512,134513 1lj9A 144 17.45 a.4.5.28 78035 1yqgA 263 17.82 2f1sA 186 18.76 2o35A 105 18.91 2d5vA 164 19.44 1lnwA 147 19.46 a.4.5.28 78104 2o4uX 334 19.68 1fqvD 149 20.14 a.157.1.1,d.42.1.1 19263,38667 1nox 205 21.68 1tygB 87 23.93 d.15.3.2 107455 1lliA 92 24.84 a.35.1.2 17025 1sedA 117 25.83 a.219.1.1 105449 1lmb3 92 27.63 2b67A 204 27.73 d.90.1.1 127970 2q88A 257 27.84 1ufmA 84 28.06 a.4.5.47 107816 1noxA 205 28.69 d.90.1.1 40242 3b7hA 78 28.96 3c1aA 315 29.01 2iskA 230 32.56 2hpaA 342 34.16 c.60.1.2 33985 1zud2 66 35.16 2dznB 82 35.37 1xd5A 112 36.17 b.78.1.1 115155 2ppxA 99 36.71 1rydA 387 36.90 c.2.1.3,d.81.1.5 118801,118802 1vjfA 180 37.73 d.116.1.1 100809 1z2nX 324 38.76 2astA 159 38.81 1gcuA 295 39.66 c.2.1.3,d.81.1.4 30063,39978 2rcyA 262 40.43 1ic8A 194 40.67 a.4.1.1,a.35.1.1 76740,76741 3bs3A 76 40.76 1jj2Q 154 41.59 d.55.1.1 63102 1bouA 139 41.62 a.88.1.1 18521 1ef4A 55 41.66 a.4.11.1 16272 2amyA 246 41.80 c.108.1.10 127026 2cro 71 41.93 2p2sA 336 43.15 2cu3A 64 43.48 2j6bA 109 43.96 d.321.1.1 138078 1zsoA 164 43.97 b.166.1.1 125610 1b0nA 111 44.52 a.34.1.1,a.35.1.3 17001,17064 2i5gA 325 46.66 2g8lA 299 48.19 e.50.1.1 134775 2ho3A 325 48.71 2bbrA 195 49.17 1b04A 318 49.62 d.142.2.2 41579 1oe4A 247 56.10 c.18.1.3 86895 1yuwA 554 56.81 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2nrrA 159 56.97 1gh2A 107 57.78 c.47.1.1 60515 1wrjA 156 58.33 2freA 200 58.88 d.90.1.1 133985 1vz0A 230 59.94 a.4.14.1,d.268.1.1 108929,108930 1hcrA 52 60.45 a.4.1.2 16020 1atnA 373 61.34 c.55.1.1,c.55.1.1 33437,33438 1zmaA 118 61.46 c.47.1.1 125354 2odvA 235 61.65 1wdvA 152 61.80 d.116.1.1 114539 1vkiA 181 62.56 d.116.1.1 108664 1m12A 84 63.33 a.64.1.1 84745 1vhtA 218 66.47 c.37.1.1 100700 2dvwB 83 67.12 3b40A 417 67.13 1vfrA 218 69.86 d.90.1.1 40247 1z00B 84 70.05 a.60.2.5 124295 2fbhA 146 71.43 a.4.5.28 133245 2h0uA 217 73.16 1aihA 170 74.20 d.163.1.1 42149 2fp8A 322 74.79 2glcA 342 74.96 1ta8A 332 76.21 d.142.2.2 112375 2fa5A 162 76.81 2fm8A 135 77.67 d.198.1.1 133767 1zljA 78 78.23 1rwsA 77 78.70 d.15.3.2 97991 6paxA 133 79.87 a.4.1.5,a.4.1.5 64758,64759 2ormA 67 80.04 1erw 105 80.15 1kay 381 80.21 2q4eA 362 80.49 2cx5A 158 80.87 2hjsA 340 81.76 c.2.1.3,d.81.1.1 136547,136548 1ywqA 200 82.52 d.90.1.1 124162 2hr3A 147 82.63 a.4.5.28 136678 1on2A 142 82.67 a.4.5.24,a.76.1.1 87103,87104 1j3wA 163 82.97 d.110.7.1 90833 1xo0A 324 83.24 a.60.9.1,d.163.1.1 115674,115675 1fseA 74 85.10 a.4.6.2 60000 1qgvA 142 86.04 c.47.1.8 33056 1mgqA 83 86.36 b.38.1.1 79099 3cjnA 162 87.45 2a6cA 83 87.48 a.35.1.13 126236 2croA 71 87.51 a.35.1.2 17038 1ku3A 73 87.66 a.4.13.2 73000 1wuaA 375 88.20 c.55.1.1,c.55.1.1 121281,121282 3bddA 142 88.27 1aiu 105 88.72 1fs1B 141 88.83 a.157.1.1,d.42.1.1 19252,38664 2inpL 89 88.94 1zh8A 340 89.18 c.2.1.3,d.81.1.5 125077,125078 2j85A 122 89.96 d.321.1.1 138133 2q0oA 236 89.97