# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	4.37e-06	d.98.1.1	134541
1jtgB	165	7.79e-06	d.98.1.1	67267
2o8xA	70	2.224		
1mt6A	280	4.475	b.76.2.1,b.85.7.1	79446,79447
1r69	69	5.694		
2h27A	73	6.937	a.4.13.2	135993
2g17A	337	13.50	c.2.1.3,d.81.1.1	134512,134513
1adrA	76	13.68	a.35.1.2	17042
1or7A	194	14.00	a.4.13.2,a.177.1.1	87332,87333
2h36X	112	14.64		
1utxA	66	15.90	a.35.1.3	108034
1yqgA	263	17.02		
2b5aA	77	17.81	a.35.1.3	127882
3bemA	218	18.02		
2ef8A	84	18.66		
1vkiA	181	18.89	d.116.1.1	108664
1y7yA	74	22.06	a.35.1.3	122729
2cxyA	125	22.22		
1z2nX	324	22.33		
2bf5A	98	23.95	d.137.1.1	128405
1nstA	325	28.48	c.37.1.5	31951
1fs1B	141	28.58	a.157.1.1,d.42.1.1	19252,38664
1vjfA	180	28.85	d.116.1.1	100809
2bnmA	198	29.71	a.35.1.3,b.82.1.10	128835,128836
2glxA	332	30.95		
1vfrA	218	34.32	d.90.1.1	40247
2d5vA	164	34.41		
1tygB	87	36.44	d.15.3.2	107455
2q88A	257	36.58		
2nrrA	159	38.05		
2fxuA	375	38.64	c.55.1.1,c.55.1.1	134340,134341
1lnwA	147	42.04	a.4.5.28	78104
1wuaA	375	42.96	c.55.1.1,c.55.1.1	121281,121282
2odvA	235	44.20		
2aqjA	538	44.20		
1atnA	373	45.20	c.55.1.1,c.55.1.1	33437,33438
2ho3A	325	47.28		
1lmb3	92	48.29		
1r69A	69	53.65	a.35.1.2	17028
1cp3A	277	53.74	c.17.1.1	30992
1lliA	92	54.99	a.35.1.2	17025
2f1sA	186	56.61		
3ceaA	346	56.96		
2hh8A	149	60.33		
2dvwB	83	60.97		
2h0uA	217	63.02		
2aawA	222	65.38	a.45.1.1,c.47.1.5	126496,126497
2jmkA	111	68.33		
1noxA	205	70.11	d.90.1.1	40242
1lj9A	144	71.23	a.4.5.28	78035
1ic8A	194	71.36	a.4.1.1,a.35.1.1	76740,76741
3broA	141	71.47		
6paxA	133	73.89	a.4.1.5,a.4.1.5	64758,64759
1sedA	117	76.06	a.219.1.1	105449
1wrjA	156	76.60		
1j3wA	163	77.82	d.110.7.1	90833
1gcuA	295	80.73	c.2.1.3,d.81.1.4	30063,39978
1yagA	375	82.85	c.55.1.1,c.55.1.1	33449,33450
1vhtA	218	82.95	c.37.1.1	100700
1nekD	115	83.88	f.21.2.2	80432
1rydA	387	86.08	c.2.1.3,d.81.1.5	118801,118802
2iskA	230	86.56		
3b7hA	78	87.16		
2i5gA	325	88.37		
1zmaA	118	89.81	c.47.1.1	125354