# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	5.51e-06	d.98.1.1	134541
1jtgB	165	7.50e-06	d.98.1.1	67267
1mt6A	280	2.041	b.76.2.1,b.85.7.1	79446,79447
2o8xA	70	2.241		
1r69	69	3.638		
2h27A	73	6.422	a.4.13.2	135993
1adrA	76	9.99	a.35.1.2	17042
1utxA	66	10.88	a.35.1.3	108034
1or7A	194	12.44	a.4.13.2,a.177.1.1	87332,87333
2b5aA	77	13.73	a.35.1.3	127882
3bemA	218	16.30		
1yqgA	263	18.92		
2ef8A	84	21.62		
2cxyA	125	23.51		
2aqjA	538	23.68		
1nstA	325	24.67	c.37.1.5	31951
1fs1B	141	26.08	a.157.1.1,d.42.1.1	19252,38664
2bnmA	198	26.72	a.35.1.3,b.82.1.10	128835,128836
1y7yA	74	28.16	a.35.1.3	122729
1tygB	87	28.52	d.15.3.2	107455
2g17A	337	29.97	c.2.1.3,d.81.1.1	134512,134513
2d5vA	164	30.23		
2i5gA	325	31.50		
2nrrA	159	32.04		
1r69A	69	35.02	a.35.1.2	17028
1lnwA	147	37.44	a.4.5.28	78104
1lj9A	144	39.71	a.4.5.28	78035
1cp3A	277	40.57	c.17.1.1	30992
2bf5A	98	40.76	d.137.1.1	128405
1vkiA	181	40.79	d.116.1.1	108664
1vfrA	218	41.17	d.90.1.1	40247
3broA	141	44.57		
2q88A	257	45.67		
2f1sA	186	47.80		
1noxA	205	50.16	d.90.1.1	40242
3b7hA	78	51.65		
2dvwB	83	54.25		
2aawA	222	54.34	a.45.1.1,c.47.1.5	126496,126497
2ppxA	99	56.02		
2iskA	230	57.54		
2odvA	235	58.03		
1lliA	92	60.17	a.35.1.2	17025
1fqvD	149	60.59	a.157.1.1,d.42.1.1	19263,38667
2h36X	112	61.43		
2glxA	332	64.06		
1nox	205	64.87		
1lmb3	92	65.59		
1vhtA	218	65.90	c.37.1.1	100700
2h0uA	217	66.77		
2dqaA	124	67.54		
1sedA	117	67.97	a.219.1.1	105449
2ho3A	325	68.83		
2o35A	105	71.57		
1z2nX	324	71.74		
1ufmA	84	76.72	a.4.5.47	107816
2cro	71	77.02		
1lstA	239	78.78	c.94.1.1	35755
1wrjA	156	78.88		
1necA	216	79.31	d.90.1.1	40249
1gcuA	295	79.78	c.2.1.3,d.81.1.4	30063,39978
2fbhA	146	80.28	a.4.5.28	133245
6paxA	133	82.72	a.4.1.5,a.4.1.5	64758,64759
2q1zA	184	83.88		
1jkoC	52	84.81	a.4.1.2	66809
3ceaA	346	86.34		
2g8lA	299	86.69	e.50.1.1	134775
1vjfA	180	87.20	d.116.1.1	100809
3bddA	142	88.34		
2p2sA	336	88.74		
3bs3A	76	89.37		
2rdpA	150	89.71		
2a0mA	316	89.96	c.42.1.1	125960