# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	2.63e-06	d.98.1.1	134541
1jtgB	165	4.15e-06	d.98.1.1	67267
2o8xA	70	2.121		
1mt6A	280	2.802	b.76.2.1,b.85.7.1	79446,79447
1r69	69	4.443		
2h27A	73	6.685	a.4.13.2	135993
1adrA	76	10.72	a.35.1.2	17042
1or7A	194	13.14	a.4.13.2,a.177.1.1	87332,87333
1utxA	66	14.89	a.35.1.3	108034
2g17A	337	16.71	c.2.1.3,d.81.1.1	134512,134513
3bemA	218	17.58		
2ef8A	84	18.45		
2b5aA	77	18.49	a.35.1.3	127882
1y7yA	74	22.03	a.35.1.3	122729
1yqgA	263	25.04		
1fs1B	141	26.06	a.157.1.1,d.42.1.1	19252,38664
1tygB	87	26.40	d.15.3.2	107455
2nrrA	159	29.13		
2bf5A	98	30.62	d.137.1.1	128405
2bnmA	198	30.74	a.35.1.3,b.82.1.10	128835,128836
1nstA	325	31.13	c.37.1.5	31951
1cp3A	277	32.79	c.17.1.1	30992
2d5vA	164	33.58		
2cxyA	125	34.17		
1vfrA	218	34.67	d.90.1.1	40247
2odvA	235	35.85		
2i5gA	325	37.87		
1z2nX	324	38.82		
2h0uA	217	39.70		
2aqjA	538	41.78		
1r69A	69	41.81	a.35.1.2	17028
2q88A	257	46.25		
1lj9A	144	47.52	a.4.5.28	78035
6paxA	133	49.09	a.4.1.5,a.4.1.5	64758,64759
1vkiA	181	49.52	d.116.1.1	108664
2f1sA	186	50.05		
1lnwA	147	51.06	a.4.5.28	78104
1noxA	205	54.40	d.90.1.1	40242
2fa1A	160	55.20	d.190.1.2	133182
1sedA	117	55.56	a.219.1.1	105449
1lmb3	92	55.99		
1vhtA	218	58.81	c.37.1.1	100700
2dvwB	83	59.99		
3broA	141	60.32		
1yuwA	554	66.13	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
2aawA	222	69.20	a.45.1.1,c.47.1.5	126496,126497
2ho3A	325	69.39		
2hh8A	149	70.74		
2h36X	112	73.31		
2iskA	230	73.64		
1lliA	92	73.81	a.35.1.2	17025
1ufmA	84	74.00	a.4.5.47	107816
2ppxA	99	74.27		
2amyA	246	75.90	c.108.1.10	127026
3b7hA	78	76.04		
2dznB	82	76.05		
1s3cA	141	76.77		
2jmkA	111	78.15		
1nox	205	78.76		
1fqvD	149	80.66	a.157.1.1,d.42.1.1	19263,38667
2fxuA	375	83.78	c.55.1.1,c.55.1.1	134340,134341
1jkoC	52	83.87	a.4.1.2	66809
1wuaA	375	84.47	c.55.1.1,c.55.1.1	121281,121282
3ceaA	346	86.42		
1mkiA	330	86.76	e.3.1.2	84994
1lstA	239	86.83	c.94.1.1	35755
2a0mA	316	87.16	c.42.1.1	125960
2g8lA	299	87.29	e.50.1.1	134775