# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2g2uB	165	0.000174	d.98.1.1	134541
1jtgB	165	0.000214	d.98.1.1	67267
2o8xA	70	6.456		
1jkoC	52	13.03	a.4.1.2	66809
6paxA	133	14.07	a.4.1.5,a.4.1.5	64758,64759
2h27A	73	17.73	a.4.13.2	135993
1r69	69	20.92		
1or7A	194	26.72	a.4.13.2,a.177.1.1	87332,87333
2h36X	112	39.64		
2h0uA	217	45.49		
3bemA	218	45.53		
2ef8A	84	47.08		
2amyA	246	47.65	c.108.1.10	127026
2iwxA	214	48.68	d.122.1.1	137758
2b5aA	77	48.84	a.35.1.3	127882
1adrA	76	52.88	a.35.1.2	17042
2bnmA	198	53.69	a.35.1.3,b.82.1.10	128835,128836
2a6mA	155	55.75	d.58.57.1	126287
3bddA	142	56.84		
1vfrA	218	58.49	d.90.1.1	40247
1vhtA	218	63.58	c.37.1.1	100700
1pdnC	128	66.97	a.4.1.5	16047
2odvA	235	67.67		
1lj9A	144	68.83	a.4.5.28	78035
3broA	141	69.83		
1hcrA	52	71.36	a.4.1.2	16020
2hd1A	326	73.87	a.211.1.2	136338
1utxA	66	75.66	a.35.1.3	108034
1vj7A	393	80.59	a.211.1.1,d.218.1.8	100801,100802
1lnwA	147	81.65	a.4.5.28	78104
1on2A	142	82.32	a.4.5.24,a.76.1.1	87103,87104
2q49A	359	83.11	c.2.1.3,d.81.1.1	139831,139832
1fqvD	149	83.48	a.157.1.1,d.42.1.1	19263,38667
3boqA	160	84.17		
1lmb3	92	84.40		
2astA	159	85.51		
1f0jA	377	86.62	a.211.1.2	19346
3b7hA	78	89.40