# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	4.00e-05	d.98.1.1	67267
2g2uB	165	5.05e-05	d.98.1.1	134541
2o8xA	70	3.784		
1r69	69	8.790		
1mt6A	280	10.08	b.76.2.1,b.85.7.1	79446,79447
2h27A	73	14.47	a.4.13.2	135993
1or7A	194	18.26	a.4.13.2,a.177.1.1	87332,87333
1utxA	66	18.28	a.35.1.3	108034
2h36X	112	19.26		
3bemA	218	22.60		
1adrA	76	25.65	a.35.1.2	17042
2b5aA	77	26.48	a.35.1.3	127882
2g17A	337	27.72	c.2.1.3,d.81.1.1	134512,134513
1y7yA	74	28.79	a.35.1.3	122729
2aqjA	538	29.40		
1tygB	87	30.22	d.15.3.2	107455
1sedA	117	31.16	a.219.1.1	105449
2ef8A	84	32.85		
2bnmA	198	36.17	a.35.1.3,b.82.1.10	128835,128836
2glxA	332	37.18		
1fqvD	149	38.01	a.157.1.1,d.42.1.1	19263,38667
2ho3A	325	40.01		
2cxyA	125	40.20		
1z2nX	324	40.25		
2d5vA	164	41.91		
1yqgA	263	42.47		
2fa1A	160	43.63	d.190.1.2	133182
1vkiA	181	45.09	d.116.1.1	108664
1vfrA	218	45.86	d.90.1.1	40247
2odvA	235	47.25		
2bf5A	98	51.23	d.137.1.1	128405
2dvwB	83	53.79		
2nrrA	159	54.40		
1rydA	387	54.67	c.2.1.3,d.81.1.5	118801,118802
2o35A	105	54.83		
1r69A	69	56.59	a.35.1.2	17028
1lnwA	147	58.44	a.4.5.28	78104
1ufmA	84	60.53	a.4.5.47	107816
2i5gA	325	62.69		
1nstA	325	63.08	c.37.1.5	31951
1lmb3	92	64.02		
1lj9A	144	65.51	a.4.5.28	78035
3c1aA	315	66.54		
2h0uA	217	66.68		
2p2sA	336	67.26		
1wuaA	375	70.31	c.55.1.1,c.55.1.1	121281,121282
2fxuA	375	71.16	c.55.1.1,c.55.1.1	134340,134341
2zcwA	202	72.20		
3ceaA	346	73.85		
1atnA	373	73.92	c.55.1.1,c.55.1.1	33437,33438
1ic8A	194	77.04	a.4.1.1,a.35.1.1	76740,76741
2amyA	246	79.24	c.108.1.10	127026
1ywuA	149	80.22	b.45.2.1	124164
2q88A	257	82.00		
1noxA	205	83.80	d.90.1.1	40242
2cohA	202	85.90	a.4.5.4,b.82.3.2	130677,130678
3b7hA	78	86.22		
1jkoC	52	86.97	a.4.1.2	66809
2fbhA	146	87.96	a.4.5.28	133245
1s3cA	141	89.72		
2iskA	230	90.00