# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2g2uB 165 4.12e-06 d.98.1.1 134541 1jtgB 165 6.01e-06 d.98.1.1 67267 1mt6A 280 0.6376 b.76.2.1,b.85.7.1 79446,79447 2hjsA 340 2.424 c.2.1.3,d.81.1.1 136547,136548 1vjfA 180 2.821 d.116.1.1 100809 1gof 639 5.820 2o8xA 70 6.721 1atg 231 7.383 3bqfA 194 8.484 2f1sA 186 10.27 2bv6A 142 11.69 1g61A 228 12.38 d.126.1.1 41126 1ggzA 148 12.83 a.39.1.5 70176 1fqvD 149 13.77 a.157.1.1,d.42.1.1 19263,38667 2h0uA 217 15.85 2d5vA 164 16.66 2e52A 300 17.40 1vkiA 181 18.46 d.116.1.1 108664 1gypA 358 18.74 c.2.1.3,d.81.1.1 30004,39919 1r69 69 18.81 2p2sA 336 20.20 1uohA 226 20.58 d.211.1.1 99690 1a9xB 379 20.88 c.8.3.1,c.23.16.1 30732,31409 1a3wA 500 21.67 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 2fgqX 332 21.93 f.4.3.1 133439 2dkhA 639 23.90 2amyA 246 24.09 c.108.1.10 127026 2ob3A 330 24.21 1yq2A 1024 25.03 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 2h36X 112 25.61 1nt0A 286 26.43 b.23.1.1,b.23.1.1,g.3.11.1 86143,86144,86145 2h27A 73 27.42 a.4.13.2 135993 1qbkB 890 29.30 a.118.1.1 19127 1bifA 469 29.50 c.37.1.7,c.60.1.4 31961,34003 3bemA 218 30.04 2qv8A 159 30.29 1plq 258 31.10 1or7A 194 31.13 a.4.13.2,a.177.1.1 87332,87333 2rfmA 192 32.18 2aqjA 538 32.22 1nstA 325 34.03 c.37.1.5 31951 2pvaA 345 34.87 d.153.1.3 41850 1utxA 66 36.30 a.35.1.3 108034 2ousA 331 38.53 2agmA 167 38.96 2f3yA 148 40.10 9gafA 295 40.81 d.153.1.5 42008 2fbwB 252 41.48 1yudA 170 41.78 b.82.1.16 124046 1sjdA 368 43.99 c.1.11.2,d.54.1.1 105632,105633 1idkA 359 44.60 b.80.1.2 28025 1tygB 87 44.71 d.15.3.2 107455 1mrgA 263 45.24 d.165.1.1 42183 1yqgA 263 47.35 2ar9A 278 47.36 3bs6A 280 48.68 2bnmA 198 48.89 a.35.1.3,b.82.1.10 128835,128836 1f0cA 305 49.23 e.1.1.1 42676 1nziA 159 50.17 b.23.1.1,g.3.11.1 86449,86450 2e58A 308 50.82 1oy3D 282 51.00 d.211.1.1 87554 1hjxA 362 51.81 c.1.8.5,d.26.3.1 83512,83513 1p7tA 731 52.37 c.1.13.1 94319 3ceaA 346 52.64 1adrA 76 53.99 a.35.1.2 17042 2b5aA 77 54.41 a.35.1.3 127882 1qasA 622 55.65 a.39.1.7,b.7.1.1,c.1.18.1 17340,23157,29585 2bf5A 98 59.44 d.137.1.1 128405 2aiqA 231 59.50 1y7yA 74 60.10 a.35.1.3 122729 2vgpA 284 61.26 1xkpC 143 63.01 d.198.1.1 122088 2ef8A 84 64.62 1o9wA 177 64.91 b.2.3.5 86713 1cjaA 342 64.97 d.144.1.3 41708 1qycA 308 65.56 c.2.1.2 96581 1u7bA 261 65.65 d.131.1.2,d.131.1.2 113083,113084 3boqA 160 65.98 1p4kA 295 66.55 d.153.1.5 87772 1oe4A 247 67.89 c.18.1.3 86895 1qnjA 240 67.95 b.47.1.2 26238 1jiwI 106 68.13 b.61.2.1 63078 1vlbA 907 68.42 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2hf0A 316 68.51 2oolA 337 69.17 1rg9A 383 69.36 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1xrsA 516 69.58 c.1.19.4 115883 1oe8A 211 69.63 a.45.1.1,c.47.1.5 86905,86906 1ex2A 189 70.38 c.51.4.2 33225 2fr7A 412 70.85 1pixA 587 71.50 c.14.1.4,c.14.1.4 118578,118579 2boqA 331 71.60 1lxa 262 72.05 1ji1A 637 73.64 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1sedA 117 74.06 a.219.1.1 105449 1xfiA 367 75.21 e.50.1.1 109584 2nrrA 159 75.40 1txvA 452 77.13 b.69.8.1 112783 1vfrA 218 77.55 d.90.1.1 40247 2i75A 320 78.16 2javA 279 80.92 d.144.1.7 138243 2pexA 153 80.93 1w8oA 601 81.01 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1vl2A 421 81.34 c.26.2.1,d.210.1.1 108708,108709 2c5uA 375 81.47 1qf5A 431 82.51 c.37.1.10 32212 1f1oA 431 82.55 a.127.1.1 19433 2fyxA 143 82.62 d.58.57.1 134411 2z0xA 158 83.60 1xyfA 436 84.61 b.42.2.1,c.1.8.3 25577,28909 2cxyA 125 85.21 1wrvA 308 85.68 1cdwA 179 85.69 d.129.1.1,d.129.1.1 41212,41213 2jabA 136 89.29