# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1jtgB	165	8.61e-06	d.98.1.1	67267
2g2uB	165	1.03e-05	d.98.1.1	134541
2o8xA	70	2.889		
1r69	69	5.097		
1mt6A	280	6.225	b.76.2.1,b.85.7.1	79446,79447
2h27A	73	9.881	a.4.13.2	135993
1utxA	66	11.81	a.35.1.3	108034
1or7A	194	12.75	a.4.13.2,a.177.1.1	87332,87333
3bemA	218	16.94		
1adrA	76	17.60	a.35.1.2	17042
2b5aA	77	18.42	a.35.1.3	127882
1y7yA	74	19.58	a.35.1.3	122729
1fqvD	149	24.23	a.157.1.1,d.42.1.1	19263,38667
1cp3A	277	27.38	c.17.1.1	30992
2bnmA	198	28.66	a.35.1.3,b.82.1.10	128835,128836
1tygB	87	28.71	d.15.3.2	107455
1sedA	117	29.11	a.219.1.1	105449
2ef8A	84	30.05		
2odvA	235	31.85		
2d5vA	164	33.83		
2h36X	112	34.83		
1ufmA	84	35.91	a.4.5.47	107816
1yqgA	263	37.74		
1vfrA	218	38.15	d.90.1.1	40247
2glxA	332	38.43		
2o35A	105	38.71		
2g17A	337	41.68	c.2.1.3,d.81.1.1	134512,134513
2cxyA	125	41.71		
1lnwA	147	41.84	a.4.5.28	78104
1r69A	69	41.89	a.35.1.2	17028
2aqjA	538	42.55		
2i5gA	325	44.38		
2ho3A	325	46.53		
2h0uA	217	47.36		
2p2sA	336	47.49		
1vkiA	181	48.74	d.116.1.1	108664
2fa1A	160	49.53	d.190.1.2	133182
2dvwB	83	50.26		
1lmb3	92	50.72		
1lj9A	144	51.67	a.4.5.28	78035
2nrrA	159	52.28		
1fs1B	141	52.65	a.157.1.1,d.42.1.1	19252,38664
1z2nX	324	57.12		
2bf5A	98	58.62	d.137.1.1	128405
2iskA	230	59.22		
2g8lA	299	59.38	e.50.1.1	134775
3b7hA	78	59.48		
1nstA	325	61.80	c.37.1.5	31951
2q88A	257	65.32		
2amyA	246	65.83	c.108.1.10	127026
3b40A	417	68.58		
1vhtA	218	68.76	c.37.1.1	100700
1jkoC	52	69.70	a.4.1.2	66809
2ppxA	99	69.81		
6paxA	133	71.08	a.4.1.5,a.4.1.5	64758,64759
1noxA	205	71.53	d.90.1.1	40242
1s3cA	141	72.28		
3boqA	160	72.28		
3ceaA	346	73.10		
1gcuA	295	74.86	c.2.1.3,d.81.1.4	30063,39978
2fbhA	146	77.54	a.4.5.28	133245
2gauA	232	80.90	a.4.5.4,b.82.3.2	134894,134895
1rydA	387	81.27	c.2.1.3,d.81.1.5	118801,118802
3bs3A	76	81.67		
1lliA	92	82.59	a.35.1.2	17025
2zcwA	202	84.50		
1nox	205	85.04		
2aawA	222	89.65	a.45.1.1,c.47.1.5	126496,126497